Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:5573

Pim1 proviral integration site 1 ( MGI:97584)
TS11 (7.5 dpc)
in situ hybridisation

Data Images
EMAGE:5573 EMAGE:5573 EMAGE:5573
Scale bar is 200 microns. Lateral view, anterior left. Scale bar is 200 microns. Distal view. Scale bar is 200 microns. Posterior view.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5573Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5573_wholemount_moderate_3D_1.wlz
5573_wholemount_weak_3D_1.wlz
5573_wholemount_possible_3D_1.wlz
5573_wholemount_notDetected_3D_1.wlz
5573_wholemount_strong_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5573_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
node
detected detected
The submitter describes expression in the node.
primitive streak
detected detected
The submitter describes expression in the primitive streak.
embryo
detected detected
regionalThe submitter describes regionally specific expression in various tissues, including the primitive streak and node.
Annotation Validation: Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1630891
Entity Detected:Pim1, proviral integration site 1 ( MGI:97584)
Sequence:sense strand is shown

>MGI:1630891
GGAGGCTGGAGGGGAGTCGGCAGTGCCGGCGGCGGGATCGGCAGTAGCAGCAGCAGCAGCAGTCACAGTC
AGCAGCAGCCCTGGGTCCCGCAGCGCCTCTCGCCCTGCCGCCTCCCGCACTGCCTGACCCAGCCGGCGAA
CCCGCCCGCGGCCAGCCCCGCCAGCGCCCTCAGTCGTCCTCCGACTCGCCCTCGGCCTTGCGCGCCAGCC
GCAGCCAGAGCCGCAACGCCACCCGCAGTCTGAGTCCCGGCCGTCGGCTCAGCCCCAGCTCGCTCCGCCG
CCGCTGCTGCTCGTCCCGGCACCGGCGCCGCACCGACACCCTGGAGGTGGGGATGCTCCTGTCCAAGATC
AACTCCCTGGCCCACCTGCGCGCCGCGCCCTGCAACGACCTGCACGCCACCAAGCTGGCGCCGGGCAAAG
AGAAGGAGCCCCTGGAGTCGCAGTACCAGGTGGGCCCGCTGTTGGGCAGCGGTGGCTTCGGCTCGGTCTA
CTCTGGCATCCGCGTCGCCGACAACTTGCCGGTGGCCATTAAGCACGTGGAGAAGGACCGGATTTCCGAT
TGGGGAGAACTGCCCAATGGCACCCGAGTGCCCATGGAAGTGGTCCTGTTGAAGAAGGTGAGCTCGGACT
TCTCGGGCGTCATTAGACTTCTGGACTGGTTCGAGAGGCCCGATAGTTTCGTGCTGATCCTGGAGAGGCC
CGAACCGGTGCAAGACCTCTTCGACTTTATCACCGAACGAGGAGCCCTACAGGAGGACCTGGCCCGAGGA
TTCTTCTGGCAGGTGCTGGAGGCCGTGCGGCATTGCCACAACTGCGGGGTTCTCCACCGCGACATCAAGG
ACGAGAACATCTTAATCGACCTGAGCCGCGGCGAAATCAAACTCATCGACTTCGGGTCGGGGGCGCTGCT
CAAGGACACAGTCTACACGGACTTTGATGGGACCCGAGTGTACAGTCCTCCAGAGTGGATTCGCTACCAT
CGCTACCACGGCAGGTCGGCAGCTGTCTGGTCCCTTGGGATCCTGCTCTATGACATGGTCTGCGGAGATA
TTCCGTTTGAGCACGATGAAGAGATCATCAAGGGCCAAGTGTTCTTCAGGCAAACTGTCTCTTCAGAGTG
TCAGCACCTTATTAAATGGTGCCTGTCCCTGAGACCATCAGATCGGCCCTCCTTTGAAGAAATCCGGAAC
CATCCATGGATGCAGGGTGACCTCCTGCCCCAGGCAGCTTCTGAGATCCATCTGCACAGTCTGTCACCGG
GGTCCAGCAAGTAGCAGCCTTTCTGCTGCTGTCTGTCAGACCCTCCAGGGAGGGAGAGCTTGTCTTCTGG
CCTCCCAACAGGACCCTGCGTGACGATGCAGGGACAGCAATGACAACTCATTCCAGACTCCAGGTCCCTG
GAGGAGCCTCCCACAAGGGAAAGAGACTACTTCACTGGTCCTGGGCCCCTCTTTGCGCGCCCCGCCCCCA
GACTCAGCGTCTAGTGTTGCTGGGCTCCCCTGAATCCATCCCTGGTTGGGGGTGGGAGTGGATCAGAGCC
CTGTCGATGGAACTTTAGTCACCATGGAGACTGGGTCACCAAGATGGGCCGGGGGGGGGGGGGGGGGGGG
GAGAGGAAAACAGTCTGGGGGGTGGGATAAAAACTAGCACCATATTTAAGTCCCTGTCACCTCTTCCAAC
TCCTGAGTGCCTTCTGTGGGGACTCCGCCTGTGCTGGGAGAAATACTTGAACTTTACCTCTTACCTGCTG
CTTCTCAAACTCTGCCTGGGTTTTGCTTCCTTCCTCTCCTCTCCTTTCCCATCCCCCACTTCCTATGAAA
GGTGCCATGGGAGAGGCTACAGGGCCAACTGCTGAGCCACCTGCCCCTTTTCTGTCTCCTTTAGTAAAAT
TCCCAAGCAAACTGGTCTTCCTCTTTGGTTTCGACTTAACTGTTTCAAAACCAAGACCTCACACAGAACG
CACAACCAATGCAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
nt 1 - nt 2032 of BC042885.1
Notes:Submitter information: The probe was made from the entire insert sequence of the IMAGE:4507947 clone.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:ICR
Age:7.5 dpc
Theiler Stage:TS11
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + BMpurple
General Information
Authors:Owen J. Tamplin, Doris Kinzel, Brian J Cox, Christine E. Bell, Janet Rossant and Heiko Lickert.
Principal investigator:Heiko Lickert, Institute of Stem Cell Research, Helmholtz Zentrum M�nchen German Research Center for Environmental Health (GmbH) Ingolst�dter Landstra�e 1, Neuherberg, Germany D-85764
Submitted by:Owen J Tamplin, The Hospital for Sick Children Research Institute, Rossant Lab Room 13-305 Developmental and Stem Cell Biology Program Toronto Medical Discovery Tower 101 College Street, Toronto, Canada M5G 1L7
Experiment type:screen
References:[ doi:10.1186/1471-2164-9-511] [ PMID:18973680] Tamplin OJ, Kinzel D, Cox BJ, Bell CE, Rossant J, Lickert H 0 Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. BMC Genomics (9):511
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE