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EMAGE:5588

Ptprd protein tyrosine phosphatase, receptor type, D ( MGI:97812)
TS14 (9.0 dpc)
in situ hybridisation

Data Images
EMAGE:5588
Scale bar is 200 microns. Lateral view.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5588Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5588_wholemount_moderate_3D_1.wlz
5588_wholemount_notDetected_3D_1.wlz
5588_wholemount_strong_3D_1.wlz
5588_wholemount_possible_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5588_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
notochord
detected detected
The submitter describes expression in the notochord.
trunk somite
detected detected
The submitter describes expression in the somites.
embryo
detected detected
The submitter describes widespread expression in various tissues.
Annotation Validation: Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1575161
Entity Detected:Ptprd, protein tyrosine phosphatase, receptor type, D ( MGI:97812)
Sequence:sense strand is shown

>MGI:1575161
GATGGAGTTAGATGAGCTGCTTAAGGAGATATCTAGAAAACGCAGAAGCATTCGTTATGGAAGAGAAGTT
GAATTAAAGCCATATATTGCTGCTCACTTTGATGTCCTTCCCACTGAGTTCACCCTGGGGGATGACAAAC
ATTATGGTGGATTTACGAACAAACAGCTCCAAAGTGGACAAGAATATGTCTTCTTTGTGTTAGCAGTGAT
GGACCATGCAGAGTCTAAGATGTATGCAACCAGCCCATACTCCGACCCTGTTGTGTCAATGGATCTGGAT
CCACAGCCAATCACAGACGAAGAGGAAGGCTTGATATGGGTCGTAGGTCCTGTCCTTGCAGTGGTGTTTA
TCATCTGTATTGTGATTGCTATTCTTCTTTATAAAAGGAAGAGGGCAGAGTCGGAGTCCAGAAAGAGCAG
CTTACCAAACAGTAAGGAGGTCCCTTCACACCACCCAACCGACCCAGTAGAACTGAGGCGCCTTAACTTT
CAAACACCAGGTATGGCTAGCCATCCTCCAATACCTATCTTGGAACTTGCAGATCATATTGAGAGGTTGA
AAGCAAATGATAACCTGAAGTTTTCCCAGGAATATGAGTCAATTGACCCTGGCCAGCAGTTCACATGGGA
ACACTCAAACTTGGAAGTAAACAAACCAAAGAACAGATATGCAAATGTCATTGCATACGATCACTCCCGG
GTTCTCTTATCAGCAATAGAAGGAATCCCAGGAAGTGACTATGTGAATGCCAACTACATAGATGGCTATA
GGAAACAAAATGCCTATATTGCAACCCAGGGATCTCTTCCTGAAACATTTGGGGACTTTTGGAGAATGAT
ATGGGAGCAACGAAGTGCCACAGTTGTCATGATGACAAAGCTAGAAGAAAGGTCGAGGGTGAAGTGTGAC
CAGTATTGGCCCAGCAGAGGCACAGAAACTCACGGGCTGGTCCAGGTGACGCTGCTGGATACTGTGGAGC
TTGCCACATACTGTGTCCGGACATTTGCACTTTATAAGAATGGATCGAGTGAGAAGAGGGAAGTGAGACA
ATTCCAGTTCACCGCCTGGCCTGATCATGGTGTTCCAGAGCACCCCACACCTTTCCTAGCTTTCTTACGG
AGAGTCAAAACCTGCAATCCTCCAGATGCAGGGCCAATGGTGGTACACTGCAGTGCTGGTGTTGGCAGAA
CTGGCTGCTTCATTGTAATAGATGCCATGTTAGAAAGAATAAAGCATGAAAAAACTGTAGATATTTATGG
CCATGTAACTTTAATGAGAGCCCAGAGGAATTACATGGTACAAACAGAAGACCAGTACATCTTTATCCAT
GATGCACTGTTAGAAGCAGTGACATGTGGAAATACCGAAGTGCCGGCTAGAAACTTGTATGCCTACATTC
AGAAGCTGACACAAATAGAAACAGGGGAGAATGTCACCGGAATGGAGCTCGAATTTAAGCGTCTAGCCAG
CTCAAAAGCTCACACCTCAAGATTCATCAGTGCCAATCTTCCATGTAATAAATTCAAAAACCGCCTTGTT
AATATTATGCCATATGAATCCACAAGGGTGTGCCTGCAGCCTATCCGAGGAGTTGAAGGCTCTGATTACA
TCAATGCCAGTTTCCTTGATGGATATAGACAACAGAAAGCCTACATTGCTACCCAGGGGCCCTTAGCAGA
GACAACTGAAGACTTTTGGCGCATGCTTTGGGAACACAATTCCACCATCGTTGTGATGCTCACCAAGCTG
AGAGAAATGGGCAGAGAGAAATGTCACCAGTACTGGCCAGCTGAACGATCTGCAAGATACCAGTATTTTG
TTGTAGATCCCATGGCTGAATATAACATGCCTCAGTATATCCTGAGGGAATTCAAGGTCACGGATGCCAG
GGATGGCCAGTCCCGAACAGTGAGGCAGTTCCAGTTCACTGACTGGCCAGAACAAGGAGTGCCAAAGTCT
GGAGAAGGATTTATTGACTTCATTGGCCAAGTCCATAAAACAAAGGAGCAGTTTGGCCAAGATGGGCCCA
TTTCCGTGCATTGCAGTGCCGGCGTTGGAAGAACTGGAGTTTTCATAACATTGAGTATTGTGTTGGAAAG
AATGAGATATGAAGGGGTGGTAGATATCTTCCAGACTGTCAAAATGTTAAGAACACAACGACCAGCCATG
GTACAAACAGAGGATCAATACCAGTTCTGCTATCGAGCCGCACTAGAATACCTGGGCAGCTTTGATCACT
ATGCAACGTAGAAACCCCTGACCCCTTCTGGATTTTTACTACAGGCCCTTCGCTATCCATGGAGTCTCTT
CTGAGCCATACAGGGCACTTGAGAAGTCCTTCTTAACTTCTAGCTAACAACCACTTAGTGGGACTATTAC
AAAAAACAAACAAAAAAAAAAAAAAA
nt 1 - nt 2406 of BC025145.1
Notes:Submitter information: The probe was made from the entire insert sequence of the IMAGE:4223353 clone.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:ICR
Age:9.0 dpc
Theiler Stage:TS14
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + BMpurple
General Information
Authors:Owen J. Tamplin, Doris Kinzel, Brian J Cox, Christine E. Bell, Janet Rossant and Heiko Lickert.
Principal investigator:Heiko Lickert, Institute of Stem Cell Research, Helmholtz Zentrum M�nchen German Research Center for Environmental Health (GmbH) Ingolst�dter Landstra�e 1, Neuherberg, Germany D-85764
Submitted by:Owen J Tamplin, The Hospital for Sick Children Research Institute, Rossant Lab Room 13-305 Developmental and Stem Cell Biology Program Toronto Medical Discovery Tower 101 College Street, Toronto, Canada M5G 1L7
Experiment type:screen
References:[ doi:10.1186/1471-2164-9-511] [ PMID:18973680] Tamplin OJ, Kinzel D, Cox BJ, Bell CE, Rossant J, Lickert H 0 Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. BMC Genomics (9):511
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE