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EMAGE:5628

Smoc1 SPARC related modular calcium binding 1 ( MGI:1929878)
TS14 (9.0 dpc)
in situ hybridisation

Data Images
EMAGE:5628
Scale bar is 500 microns. Lateral view.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5628Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5628_wholemount_moderate_3D_1.wlz
5628_wholemount_weak_3D_1.wlz
5628_wholemount_notDetected_3D_1.wlz
5628_wholemount_strong_3D_1.wlz
5628_wholemount_possible_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5628_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
notochord
detected detected
The submitter describes expression in the notochord.
trunk somite
detected detected
The submitter describes expression in the somites.
head somite
detected detected
The submitter describes expression in the somites.
primitive streak
detected detected
The submitter describes expression in the primitive streak.
embryo
detected detected
regionalThe submitter describes expression in the endoderm.
Annotation Validation: Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3069167
Entity Detected:Smoc1, SPARC related modular calcium binding 1 ( MGI:1929878)
Sequence:sense strand is shown

>MGI:3069167
CCAAGTTTACCCATTTTTATTTTTTATAAAACAAGCTACAAATACTTTTTCTTGCTCCCGCCTCCCCAAG
GGAAAACCACACAGCACAGCCTACGCCCATCTGTGAGAGAGAAGTTGGCTGGTCAGATTCTAAACTCCTA
CATAAAGGGGGCTTCTCTGTGCACATTTCCTTCTGGCCAGGAAATGGGACTGGAGTCTGCTGGGAGGGCC
ATCCAGCTCCAGCCTGCTGCGTGCGGGGTTTCTGTTCAAGGCTCCAAGAGAAGGTGTTCTTCCCACCTTA
CCATGCAGGACAGGGTTACTGGTCATCATGGGACAGCATGTGTGACT
Notes:Submitter information: H3120E06 is from NIA 15k clone set. The probe was made from the entire insert sequence of the clone.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:ICR
Age:9.0 dpc
Theiler Stage:TS14
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + BMpurple
General Information
Authors:Owen J. Tamplin, Doris Kinzel, Brian J Cox, Christine E. Bell, Janet Rossant and Heiko Lickert.
Principal investigator:Heiko Lickert, Institute of Stem Cell Research, Helmholtz Zentrum M�nchen German Research Center for Environmental Health (GmbH) Ingolst�dter Landstra�e 1, Neuherberg, Germany D-85764
Submitted by:Owen J Tamplin, The Hospital for Sick Children Research Institute, Rossant Lab Room 13-305 Developmental and Stem Cell Biology Program Toronto Medical Discovery Tower 101 College Street, Toronto, Canada M5G 1L7
Experiment type:screen
References:[ doi:10.1186/1471-2164-9-511] [ PMID:18973680] Tamplin OJ, Kinzel D, Cox BJ, Bell CE, Rossant J, Lickert H 0 Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. BMC Genomics (9):511
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE