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EMAGE:5786

Hoxa5 homeobox A5 ( MGI:96177)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:5786
Figure 4A. Copyright: Reprinted with permission from Elsevier from [doi:10.1006/dbio.2002.0596] Dev Biol 244: 96-113, Aubin J; Lemieux M; Moreau J; Lapointe J; Jeannotte L, "Cooperation of Hoxa5 and Pax1 Genes during Formation of the Pectoral Girdle." Copyright 2002 [PMID:11900462]

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5786Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5786_wholemount__moderate.wlz
5786_wholemount__weak.wlz
5786_wholemount__notDetected.wlz
5786_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5786_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
embryo
detected detected
regionalThe expression pattern is not described by the authors.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Hoxa5 probeA
Entity Detected:Hoxa5, homeobox A5 ( MGI:96177)
Sequence:sense strand is shown

>Hoxa5 probeA
AGCTTTGGAACCTCCTACAGCTTTTCCCACTATGTTCTTCTGGCCTGAGGTTTCTGATGGTTCTGAGTGA
GGAAAGCTATGAGTCAAGGTGTTGGTGTGAAGCCACAATGAACAGGCAGGCTGCCCAGGTAGCCGCAGAC
TCAGCAGCCTACAGTACTATTGGACAGACAGAAAAGCAGAAAGAGCAGCTTGCTATTTGGCATAAATCAG
ACCAAGAGAACTTACAATAGAAAGTTTATTTTGTTTTGTTTCCAGTCAGTGTTTTTTTTCCTTAAAAACA
AATACAAAAAAAAAAAAAAGCTGATCACAGTTTGCTTAAACAGCCAGACTTGGACAATATTTGTAACTTT
TTCACAAAAACATACATCACTGAAGCTGCGCTTATAAGAGCCACTTCCAGAGTTCGTGCAAAGGGTCCTA
CAAAGGCACGCAGGGACACACCGCTTGGAGTCACAGTTTTCGTCACAGAGCCACTAGCCACTACACGTTG
AACAAGTTAATTTGTGTCTTATCAAGTCACCTCTACAACAGCATTAATTACACAAGGAATATAGGTAGTT
TGAATAAAAATATCTTTAACAGCTTGGAGCTATTGAGACAGGAACACTTCCACGTACATGCACATTAAAG
AACTCAAGTGCAACACACAACATTGGCACTAAACGAGGTGGGGGGGCTTTTTGTGTGTGTAGTTTTTTTT
TCTCTTTTCTTTTTTTTTTTTTTTTGTTTTAGTTACTTCAAGTAACACAGCTTGCTTCATATAAATAAGT
TAAAACATCTATTTTTTTTTCAAGACAAAGCCATTCAGGACAAAGAGATGAACAGAAGCAG
nt 52151566 - nt 52152396 of NC_000072.5
Notes:The Hoxa5 probe used in this study by Aubin et al., 2002 [PMID:11900462] was "a 850-bp BglII-HindIII genomic fragment containing the 3'-untranslated region of the second exon of the Hoxa5 gene". Editor's note: BglII-HindIII digestion of the Mus musculus (C57BL/6J) chromosome 6 reference assembly NC_000072.5 produces an 830 bp fragment covering the 3'-untranslated region of the second exon of Hoxa5.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Aubin J; Lemieux M; Moreau J; Lapointe J; Jeannotte L, 2002 [PMID:11900462] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1006/dbio.2002.0596] [ PMID:11900462] Aubin J, Lemieux M, Moreau J, Lapointe J, Jeannotte L 2002 Cooperation of Hoxa5 and Pax1 genes during formation of the pectoral girdle. Dev Biol (244):96-113
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE