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EMAGE:5788

Hoxc4 homeobox C4 ( MGI:96195)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:5788
Figure 3G2. of [doi:10.1046/j.1440-169x.2002.00623.x] Kawazoe Y; Sekimoto T; Araki M; Takagi K; Araki K; Yamamura K, "Region-specific gastrointestinal Hox code during murine embryonal gut development." Dev Growth Differ 2002; 44: 77-84. [PMID:11869294]

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5788Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5788_wholemount__moderate.wlz
5788_wholemount__weak.wlz
5788_wholemount__possible.wlz
5788_wholemount__notDetected.wlz
5788_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5788_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
gut
not detected not detected
homogeneous
trunk paraxial mesenchyme
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Hoxc4 probeA
Entity Detected:Hoxc4, homeobox C4 ( MGI:96195)
Notes:The Hoxc4 probe used in this study by Kawazoe et al., 2002 [PMID:11869294] was "provided by Professor K. Shimada (Osaka University, Japan)". Figure 2 therein depicts a cartoon representation of the probe: it is 880nt in length and covers the whole ORF and a small portion of the adjacent 3'UTR.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:BDF1
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Kawazoe Y; Sekimoto T; Araki M; Takagi K; Araki K; Yamamura K, 2002 [PMID:11869294] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1046/j.1440-169x.2002.00623.x] [ PMID:11869294] Kawazoe Y, Sekimoto T, Araki M, Takagi K, Araki K, Yamamura K 2002 Region-specific gastrointestinal Hox code during murine embryonal gut development. Dev Growth Differ (44):77-84
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE