Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:5791

Hs2st1 heparan sulfate 2-O-sulfotransferase 1 ( MGI:1346049)
TS15 (10.0 dpc)
in situ hybridisation

Data Images
EMAGE:5791
Figure 3D. of [doi:10.1101/gad.12.12.1894] Bullock SL; Fletcher JM; Beddington RS; Wilson VA, "Renal agenesis in mice homozygous for a gene trap mutation in the gene encoding heparan sulfate 2-sulfotransferase." Genes Dev 1998; 12: 1894-906. [PMID:9637690]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5791Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5791_wholemount__moderate.wlz
5791_wholemount__weak.wlz
5791_wholemount__possible.wlz
5791_wholemount__notDetected.wlz
5791_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5791_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
future brain
detected detected
regionalThe dorsal and ventral aspects of the neural tube, brain, and midbrain-hindbrain junction showed the most intense staining
neural tube
detected detected
regionalThe dorsal and ventral aspects of the neural tube, brain, and midbrain-hindbrain junction showed the most intense staining
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Hs2st1 probeA
Entity Detected:Hs2st1, heparan sulfate 2-O-sulfotransferase 1 ( MGI:1346049)
Sequence:sense strand is shown

>Hs2st1 probeA
CCGCCCAAGTTGCAGCTGCTGGCGGTGGTGGCCTTCGCGGTGGCGATGCTCTTCTTGGAGAACCAGATCC
AGAAGCTGGAGGAGTCCCGGGCGAAGCTAGAAAGGGCAATTGCAAGGCACGAAGTCCGAGAAATTGAACA
GCGCCATACAATGGATGGCCCTCGGCAGGATGCAACTCTGGATGAAGAAGAAGACATAATCATCATTTAT
AACAGAGTGCCCAAAACTGCAAGCACCTCGTTCACCAATATAGCCTACGACCTGTGTGCAAAGAATAGAT
ACCATGTTCTTCACATCAACACTACCAAAAATAACCCAGTAATGTCATTGCAAGATCAGGTGCGCTTTGT
GAAGAACATAACCACCTGGAACGAGATGAAGCCAGGCTTCTATCACGGACACATCTCTTACTTGGATTTT
GCAAAATTCGGTGTGAAGAAGAAACCAATTTATATCAATGTCATCAGGGACCCTATTGAGAGGCTAGTTT
CCTACTATTACTTCCTGAGGTTTGGAGATGATTACAGACCAGGATTAAGGAGACGGAAACAAGGAGACAA
AAAGACCTTCGATGAATGTGTGGCTGAGGGCGGCTCCGACTGTGCTCCAGAGAAGCTCTGGCTTCAGATC
CCGTTCTTCTGTGGCCACAGCTCAGAATGCTGGAATGTAGGGAGCAGATGGGCCATGGACCAGGCTAAGT
CTAACCTCATTAATGAGTACTTCCTGGTGGGAGTCACCGAGGAGCTCGAGGACTTCATCATGCTGCTCGA
GGCAGCTTTGCCCCGATTCTTCCGGGGCGCTACCGACCTCTACCGTACAGGAAAGAAATCTCACCTTAGG
AAAACCACAGAGAAGAAGCTGCCCACCAAGCAGACTATCGCGAAGCTGCAGCAGTCTGACATTTGGAAGA
TGGAGAATGAGTTCTATGAGTTTGCTCTGGAGCAGTTCCAGTTCATCCGAGCTCACG
nt 384 - nt 1350 of NM_011828.3
Notes:The Hs2st1 probe used in this study by Bullock et al, 1998 [PMID:9637690] "was transcribed from a cDNA clone representing amino acids 8-330".
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.0 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Bullock SL; Fletcher JM; Beddington RS; Wilson VA, 1998 [PMID:9637690] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1101/gad.12.12.1894] [ PMID:9637690] Bullock SL, Fletcher JM, Beddington RS, Wilson VA 1998 Renal agenesis in mice homozygous for a gene trap mutation in the gene encoding heparan sulfate 2-sulfotransferase. Genes Dev (12):1894-906
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE