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EMAGE:5799

Ihh Indian hedgehog ( MGI:96533)
TS15 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:5799
Figure S2a. [doi:10.1101/gad.1190304] Jeong J; Mao J; Tenzen T; Kottmann AH; McMahon AP, "Hedgehog signaling in the neural crest cells regulates the patterning and growth of facial primordia." Genes Dev 2004; 18: 937-51 [PMID:15107405]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5799Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5799_wholemount__moderate.wlz
5799_wholemount__notDetected.wlz
5799_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5799_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
branchial arch
not detected not detected
homogeneousNo Ihh expression is detected in the head by in situ hybridization until E12
head mesenchyme
not detected not detected
homogeneousNo Ihh expression is detected in the head by in situ hybridization until E12
future brain
not detected not detected
homogeneousNo Ihh expression is detected in the head by in situ hybridization until E12
ear
not detected not detected
homogeneousNo Ihh expression is detected in the head by in situ hybridization until E12
eye
not detected not detected
homogeneousNo Ihh expression is detected in the head by in situ hybridization until E12
nose
not detected not detected
homogeneousNo Ihh expression is detected in the head by in situ hybridization until E12
oral region
not detected not detected
homogeneousNo Ihh expression is detected in the head by in situ hybridization until E12
midgut
detected detected
regionalExpressed in endoderm
hindgut
detected detected
regionalExpressed in endoderm
foregut
not detected not detected
homogeneousNo Ihh expression is detected in the head by in situ hybridization until E12
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Ihh probeA
Entity Detected:Ihh, Indian hedgehog ( MGI:96533)
Notes:The Ihh probe used in this study by Jeong et al., 2004 [PMID:15107405] is of unreported sequence.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Jeong J; Mao J; Tenzen T; Kottmann AH; McMahon AP, 2004 [PMID:15107405] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1101/gad.1190304] [ PMID:15107405] Jeong J, Mao J, Tenzen T, Kottmann AH, McMahon AP 2004 Hedgehog signaling in the neural crest cells regulates the patterning and growth of facial primordia. Genes Dev (18):937-51
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE