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EMAGE:5820

Foxd1 forkhead box D1 ( MGI:1347463)
TS17 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:5820
Fig4I. from [doi:10.1101/gad.1190304] Genes Dev 2004 18(8): 937-51, Jeong J; Mao J; Tenzen T; Kottmann AH; McMahon AP, Hedgehog signaling in the neural crest cells regulates the patterning and growth of facial primordia. Copyright 2004 [PMID:15107405]

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5820Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5820_wholemount__moderate.wlz
5820_wholemount__notDetected.wlz
5820_wholemount__strong.wlz
5820_wholemount__possible.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5820_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
1st branchial arch mandibular component
detected detected
regionalFoxd1 is expressed around the first pharyngeal cleft and the anterodistal mesenchyme.
2nd branchial arch
detected detected
regionalFoxd1 is expressed around the first pharyngeal cleft and the anterodistal mesenchyme.
1st branchial arch maxillary component
detected detected
regionalFoxd1 is expressed in the caudal half.
nose
detected detected
regionalFoxd1 is expressed in the medial nasal mesenchyme.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Foxd1 probeA
Entity Detected:Foxd1, forkhead box D1 ( MGI:1347463)
Notes:The Foxd1 probe used in this study by Jeong et al., 2004 [PMID:15107405] is of unreported sequence.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS17
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Jeong J; Mao J; Tenzen T; Kottmann AH; McMahon AP, 2004 [PMID:15107405] , Indexed and Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1101/gad.1190304] [ PMID:15107405] Jeong J, Mao J, Tenzen T, Kottmann AH, McMahon AP 2004 Hedgehog signaling in the neural crest cells regulates the patterning and growth of facial primordia. Genes Dev (18):937-51
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE