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EMAGE:5849

Gabpb1 GA repeat binding protein, beta 1 ( MGI:95611)
TS18 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:5849
Figure 2A(viii) from [doi:10.1016/j.gene.2004.09.031] Gene 344 :79-92. O'Leary DA; Koleski D; Kola I; Hertzog PJ; Ristevski S, Identification and expression analysis of alternative transcripts of the mouse GA-binding protein (Gabp) subunits alpha and beta1. Copyright 2004. [PMID:15656975]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5849Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5849_wholemount__moderate.wlz
5849_wholemount__weak.wlz
5849_wholemount__notDetected.wlz
5849_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5849_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
dorsal root ganglion
detected detected
trunk somite
detected detected
regionalExpression is detected in the developing myotomes.
tail somite
detected detected
regionalExpression is detected in the developing myotomes.
midbrain
detected detected
Expression is detected in the mesencephalon.
forelimb bud
detected detected
hindlimb bud
detected detected
1st branchial arch mandibular component
detected detected
2nd branchial arch
detected detected
nose
detected detected
regionalExpression is detcted in the nasopharyngeal ectoderm and mesoderm.
rhombomere 01
detected detected
Expression is detected in the cerebellum.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Gabpb1 probeA
Entity Detected:Gabpb1, GA repeat binding protein, beta 1 ( MGI:95611)
Sequence:sense strand is shown

>Gabpb1 probeA
GTCTGCCCTGACGGCTCCGAGGCGCCGCGGTCCCCGCACCTCCTCCCGCTGCTCCCCCGCCGCCGCTCCC
GAAGCTTTTCCAGATGTCCCTGGTAGATTTGGGGAAGAAGCTTTTAGAAGCGGCACGAGCCGGTCAAGAT
GATGAAGTTCGCATTTTGATGGCAAATGGAGCTCCTTTTACTACAGACTGGTTGGGAACTTCTCCACTTC
ATCTGGCCGCACAGTATGGGCATTTCTCTACCACAGAGGTTCTTCTCCGAGCCGGTGTAAGTAGAGATGC
CAGGACCAAAGTGGACCGGACACCACTGCACATGGCGGCTTCTGAGGGCCATGCCAACATAGTAGAAGTT
TTGCTTAAGCATGGTGCTGACGTCAATGCAAAGGATATGTTAAAGATGACAGCTCTGCATTGGGCAACAG
AACATAATCATCAAGAGGTGGTGGAGCTTTTAATCAAATATGGTGCTGATGTACACACGCAGAGTAAATT
TTGTAAAACTGCATTTGATATTTCAATAGACAATGGAAATGAAGATTTAGCAGAGATATTACAGATTGCT
ATGCAGAACCAAATCAACACCAACCCGGAGAGTCCTGACACTGTGACAATACACGCTGCCACACCACAGT
TCATCATTGGACCCGGAGGGGTGGTGAACCTCACAGATGAAACAGGAGTATCTGCTGTTCAGTTTGGAAA
CTCCTCTACGTCAGTATTAGCTACGTTAGCTGCCTTAGCTGAAGCTTCTGCCCCATTGTCCAATTCTTCA
GAAACTCCAGTGGCCACAGAGGAAGTGGTTACCGCAGAATCTGTGGATGGTGCAATTCAGCAAGTAGTTA
GCTCAGGGGGTCAGCAAGTCATCACGATAGTTACAGATGGAATCCAGCTGGGGAATTTGCACTCCATACC
AACCAGTGGGATGGGTCAGCCCATCATTGTGACGATGCCCGATGGACAGCAAGTATTGACAGTACCAGCA
ACAGACATTGCTGAAGAAACTGTCATCAGTGAAGAGCCACCAGCTAAGAGACAGTGTATGGAAATAATTG
AGAGCCGGGTGGAATGTGCAGAAATTGAAGAGAGAGAAGCGCTTCAGAAACAGCTGGATGAAGCCAACCG
AGAGGCCCAGAAATACCGACAGCAGCTGCTTAAGAAGGAGCAGGAGGCAGAGGCCTACAGGCAGAAGCTG
GAGGCCATGACACGCATCCAGACCAACAAAGAAGCCGTTTAGCTGCCATGAACACCAGTTTGCTTTTACC
TTTTGTCCAGAAAGAATATAGTCTTGAACTGTACACAGTAAGGACACAGCCATGGGAATACCGAATAATA
GAAAATACTACAGCTTGATAACGGGACTTAAGCCATGAG
nt 50 - nt 1418 of M74516.1
Notes:The Gabpb1 probe used in this study by O'Leary et al., 2005 [PMID:15656975] is described as "a Gabpbeta1-1 fragment spanning 50-1418 bp of GI:193384."
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6 x CBA
Age:10.5 dpc
Theiler Stage:TS18
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:O'Leary DA; Koleski D; Kola I; Hertzog PJ; Ristevski S, 2005 [PMID:15656975] , Indexed and Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/j.gene.2004.09.031] [ PMID:15656975] O'Leary DA, Koleski D, Kola I, Hertzog PJ, Ristevski S 2005 Identification and expression analysis of alternative transcripts of the mouse GA-binding protein (Gabp) subunits alpha and beta1. Gene (344):79-92
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE