EMAGE mouse gene expression spatial database

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EMAGE:5902

Lpar4 lysophosphatidic acid receptor 4 ( MGI:1925384)
TS17 (10.5 dpc)
in situ hybridisation

Data Images


Figure 3D. [doi:10.1002/dvdy.21736] Copyright. This image is from Ohuchi H; Hamada A; Matsuda H; Takagi A; Tanaka M; Aoki J; Arai H; Noji S, "Expression patterns of the lysophospholipid receptor genes during mouse early development." Dev Dyn 2008; 237: 3280-94. Reprinted with permission of Wiley-Liss Inc. [PMID:18924241] .

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

5902_wholemount__moderate.wlz

5902_wholemount__weak.wlz

5902_wholemount__possible.wlz

5902_wholemount__notDetected.wlz

5902_wholemount__strong.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:5902_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

1st branchial arch

detected

2nd branchial arch

detected

limb

detected

liver

detected

trunk somite

detected

tail somite

detected

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	Lpar4 probeA
Entity Detected:	Lpar4, lysophosphatidic acid receptor 4 ( MGI:1925384)
Sequence:	sense strand is shown >Lpar4 probeA AAGTCTCAGACCCAGGTTGGGAAATGCAACTGCCAATAATACTTGCATTGTTGATGATTCCTTCAAGTAT AATTTGAATGGTGCTGTCTATAGTGTTGTATTCATCCTGGGTCTAATAACCAGCAGTGCCTCCCTGTTTG TCTTCTGCTTCCGCATGAAAATGAGAAGTGAGACGGCTATTTTCATCACCAACCTGGCCCTCTCTGATTT GCTTTTTGTTTGTACCCTACCTTTCAAAATATTTTACAACTTTAATCGCCACTGGCCTTTTGGTGACACC CTCTGTAAGATCTCAGGGACTGCGTTCCTCACCAACATCTATGGGAGCATGCTCTTCCTCACCTGCATCA GTGTGGATCGTTTCCTAGCCATTGTCTATCCCTTCCGATCGCGTACCATCAGGACCAGGAGGAATTCCGC CATTGTGTGCGCTGGAGTCTGGATCCTAGTCCTCAGTGGTGGTATTTCAGCTTCTTTGTTCTCCACCACT AATGTCAACAATGCGACCACCACTTGCTTTGAAGGCTTCTCCAAACGTGTCTGGAAGACATACCTGTCCA AGATCACTATATTCATTGAAGTTGTTGGATTCATCATTCCTCTGATATTGAATGTTTCTTGTTCTTCTGT GGTGCTTAGAACCCTCCGCAAGCCTGCAACATTGTCTCAGATTGGGACCAATAAAAAAAAAGTGTTGAAG ATGATCACAGTGCATATGGCAGTGTTTGTGGTATGCTTTGTACCATACAACTCCGTTCTCTTTTTATATG CCTTGGTACGCTCCCAAGCCATTACTAATTGCTTATTGGAAAGGTTTGCAAAGATCATGTACCCAATTAC CTTGTGCCTTGCAACTCTGAATTGTTGCTTTGATCCTTTTATCTATTACTTCACTCTTGAATCCTTTCAG AAGTCCTTTTATATCAATACACATATAAGGATGGAGTCGCTGTTTAAGACTGAGACACCTCTGACCCCCA AACCTTCCCTTCCAGCTATCC
	nt 566 - nt 1566 of NM_175271.3
Notes:	The Lpar4 (Lpa4) probe template used in this study by Ohuchi et al., 2008 [PMID:18924241] was generated by PCR using the primers 5'-AAGTCTCAGACCCAGGTTGG-3' (left) and 5'-GGATAGCTGGAAGGGAAGGT-3' (right) and the template cDNA described by Tanaka et al. 2006 [PMID:16829511] . The probe transcribed from it is 1001nt in length.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Age:	10.5 dpc
Theiler Stage:	TS17
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

General Information

Authors:	Ohuchi H; Hamada A; Matsuda H; Takagi A; Tanaka M; Aoki J; Arai H; Noji S, 2008 [PMID:18924241] . Indexed and spatially mapped by EMAGE.
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1002/dvdy.21736] [ PMID:18924241] Ohuchi H, Hamada A, Matsuda H, Takagi A, Tanaka M, Aoki J, Arai H, Noji S 2008 Expression patterns of the lysophospholipid receptor genes during mouse early development. Dev Dyn (237):3280-94
Links:	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source