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EMAGE:5910

Acss2 acyl-CoA synthetase short-chain family member 2 ( MGI:1890410)
TS16 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:5910
Figure 2B. Copyright: Reprinted with permission from Elsevier from [doi:10.1016/S0925-4773(02)00097-7] Mech Dev 115: 139-41, Loikkanen I; Haghighi S; Vainio S; Pajunen A, "Expression of cytosolic acetyl-CoA synthetase gene is developmentally regulated." Copyright 2002. [PMID:12049778]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5910Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5910_wholemount__moderate.wlz
5910_wholemount__weak.wlz
5910_wholemount__possible.wlz
5910_wholemount__notDetected.wlz
5910_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5910_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
future brain
detected detected
future forebrain
strong strong
future spinal cord
detected detected
dorsal root ganglion
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3794997
Entity Detected:Acss2, acyl-CoA synthetase short-chain family member 2 ( MGI:1890410)
Sequence:sense strand is shown

>MGI:3794997
GGATCCCCACATACCCAGATGAAGGGCGCTTGTGGAGCATTGTGGACAAATACAAGGTGACCAAGTTCTA
CACGGCACCAACAGCCATCCGGATGCTCATGAAGTTTGGAGATGATCCTGTCACCAAGCATAGCCGGGCA
TCCCTGCAGGTGCTGGGCACAGTAGGTGAACCCATCAACCCTGAAGCCTGGTTATGGTACCACCGGGTAG
TAGGTTCCCAGCGCTGCCCCATTGTAGACACCTTCTGGCAAACAGAAACAGGTGGCCATATGCTGACCCC
TCTCCCTGGCGCCACACCCATGAAACCTGGTTCTGCTTCTTTCCCATTCTTCGGTGTAGCGCTGCAATCC
TTGAATGAGTCCGGGGAGGAGCTGGAAGGGGAAGCTGAAGGTTATCTGGTGTTCAAGCAGCCCTGGCCAG
GGATCATGCGCACAGTCTATGGGAACCACACACGGTTTGAGACCACCTACTTTAAGAAGTTCCCTGGCTA
CTATGTGACCGGAGATGGCTGCCGACGGGATCAGGATGGCTATTACTGGATCACGGGCAGGATTGATGAC
ATGCTCAATGTGTCTGGACATCTCCTGAGTACAGCAGAGGTGGAATCGGCACTTGTGGAACACGAGGCTG
TCGCAGAGGCAGCTGTGGTGGGCCACCCTCATCCTGTGAAGGGCGAATGCCTCTACTGCTTTGTTACCTT
GTGTGATGGCCATACCTTCAGCCCCACACTCACAGAGGAACTCAAGAAGCAGATTAGAGAAAAGATTGGC
CCCATTGCCACACCAGACTACATCCAGAATGCACCTGGCTTGCTTAAACCACGCTCAGGGAAAATCATGA
GGCGAGTTCTCCGGAAGATTGCTCAGAATGACCATGACCTGGGGGATACATCTACGGTGGCTGACCCATC
TGTCATCAACCATCTCTTCAGTCACCGCTGCCTGACCACCCAGTGAACAAGACTCTTGTCCAGGATTTCC
CTGTGCTTGGCTCTCCAAATTTCTGCCCATCCATCCTGCCCCTCACACAGTAGTACTAGTTGACAGTACT
AGTTGGTTGAAACTAGGGAGACAGTTACCTAGACTACCAGGTAGAAGGGACAGGGGTCAGGTCAACCTCA
CACTGATATGCTCCTCGACTAGAGAGGTCTCCAAGCCCAGAACAGAGACTTGAACACCATGTCCTTAACC
AAAGTCAGCTCTTCAGAGTGTAAATGAGGGTCTGACTGGAAGCAGGGCAGCAGCTGTAATTCTTCCAGCT
CTCTCCAAAAGCACCAGTTCTTATCTTGGGCCTCACTAGGCTTTAGAAATGAGTTTGTGAGTCTATGAAT
AATTATTTTTAAAAAAACTTTGTTGTCTCTGTTCTGAGTCT
nt 1165 - nt 2535 of AF216873.1
Notes:The Acss2 (AceCS1) probe used in this study by Loikkanen et al., 2002 [PMID:12049778] was "prepared from the mouse clone AF216873 in the pBluescript SK-vector. For the antisense probe the vector was linearized with BamHI and a 1370-bp long (bases 1165-2535) RNA probe was synthesized with T7 RNA polymerase".
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Loikkanen I; Haghighi S; Vainio S; Pajunen A, 2002 [PMID:12049778] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1016/S0925-4773(02)00097-7] [ PMID:12049778] Loikkanen I, Haghighi S, Vainio S, Pajunen A 2002 Expression of cytosolic acetyl-CoA synthetase gene is developmentally regulated. Mech Dev (115):139-41
Links:MGI:3795014 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI