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EMAGE:5956

Efna2 ephrin A2 ( MGI:102707)
TS16 (33 Somite no.)
in situ hybridisation

Data Images
EMAGE:5956
Figure 4F. Copyright: This image is from Basson MA; Echevarria D; Petersen Ahn C; Sudarov A; Joyner AL; Mason IJ; Martinez S; Martin GR, "Specific regions within the embryonic midbrain and cerebellum require different levels of FGF signaling during development." Development 2008; 135: 889-98 [doi:10.1242/dev.011569] and is displayed with the permission of The Company of Biologist Limited who owns the Copyright. [PMID:18216176]

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Note: The extent of the expression domain from the mesencephalon/r1 boundary (red circle) towards the forebrain is indicated by a broken red arrow.
Expression Pattern Description
Spatial Annotation:
EMAGE:5956Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5956_wholemount__moderate.wlz
5956_wholemount__possible.wlz
5956_wholemount__notDetected.wlz
5956_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5956_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
future midbrain
detected detected
regionalExpressed from isthmic organiser anteriorly towards forebrain.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Efna2 probeB
Entity Detected:Efna2, ephrin A2 ( MGI:102707)
Notes:The Efna2 probe used in this study by Basson et al., 2008 [PMID:18216176] is of unreported sequence.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:33 Somite no.
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
General Information
Authors:Basson MA; Echevarria D; Petersen Ahn C; Sudarov A; Joyner AL; Mason IJ; Martinez S; Martin GR, 2008 [PMID:18216176] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1242/dev.011569] [ PMID:18216176] Basson MA, Echevarria D, Ahn CP, Sudarov A, Joyner AL, Mason IJ, Martinez S, Martin GR 2008 Specific regions within the embryonic midbrain and cerebellum require different levels of FGF signaling during development. Development (135):889-98
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE