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EMAGE:5969

Gpr143 G protein-coupled receptor 143 ( MGI:107193)
TS16 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:5969
Figure 2. Surace EM; Angeletti B; Ballabio A; Marigo V, "Expression pattern of the ocular albinism type 1 (Oa1) gene in the murine retinal pigment epithelium" Invest Ophthalmol Vis Sci 2000 Dec;41(13):4333-7. [PMID:11095635]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5969Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5969_wholemount__possible.wlz
5969_wholemount__notDetected.wlz
5969_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5969_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
optic cup
detected detected
regionalExpression restricted dorsally.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Gpr143 probeA
Entity Detected:Gpr143, G protein-coupled receptor 143 ( MGI:107193)
Sequence:sense strand is shown

>Gpr143 probeA
GCCCAGCACCTGATCAGGAAAAGCTGAAAGTGTGGGTTCCGAAACCAGAGACCGGTCCCTGAGCAAGACG
AATGGCCTCCCCGCGCCTGGGAATTTTCTGCTGCCCTACGTGGGACGCAGCCACACAGCTGGTGCTAAGC
TTCCAACCGCGGGTGTTCCATGCCCTGTGCCTGGGAAGCGGCACTCTCCGCCTGGTGCTTGGCCTCCTTC
AGCTCCTATCAGGGCGTCGATCTGTTGGTCACAGGGCGCCTGCGACATCCCCAGCCGCCTCAGTCCACAT
CCTCCGTGCTGCCACTGCCTGTGACTTGCTTGGCTGCCTGGGAATCGTTATCAGGTCCACAGTGTGGATA
GCCTACCCAGAGTTCATTGAAAACATTTCCAATGTGAATGCAACAGACATTTGGCCTGCTACTTTCTGTG
TGGGGAGCGCAATGTGGATCCAGCTGTTGTACAGTGCCTGCTTCTGGTGGCTCTTTTGCTATGCAGTTGA
TGTCTACTTGGTGATCAGGAGATCGGCGGGACGGAGCACCATCCTGCTGTACCACATCATGGCCTGGGGC
CTGGCTGTGCTGCTCTGTGTGGAGGGAGCAGTCATGCTCTACTACCCTTCTGTGTCCAGGTGTGAGAGGG
GCCTGGACCATGCCATCCCCCATTATGTCACCACATACTTGCCACTTCTGCTTGTCCTGGTGGCCAACCC
AATCCTGTTTCACAAGACAGTGACTTCAGTGGCCTCTTTACTGAAAGGAAGAAAAGGTGTTTACACAGAG
AATGAGAGACTGATGGGGGCTGTGATCAAGACCCGTTTTTTCAAAATAATGCTGGTGTTAATTGCATGTT
GGTTGTCCAATATCATCAATGAAAGTCTTTTGTTCTACCTTGAAATGCAACCAGATATCCATGGAGGCTC
TCTGAAACGCATCCAGAATGCAGCTAGGACCACATGGTTTATAATGGGAATACTGAATCCAGCCCAAGGA
CTTCTCTTGTCTCTGGCCTTCTATGGCTGGACAGGATGCAGCCTGGATGTCCATCCTCCCAAGATGGTGA
TTCAGTGGGAAACAATGACTGCCTCTGCTGCTGAGGGCACGTACCAGACCCCTGTGCGTTCCTGTGTGCC
CCATCAAAACCCCAGGAAGGTTGTATGTGTCGGGGGACATACTTCTGATGAGGTGCTGAGCATTTTGTCT
GAAGATTCAGATGCCAGTACTGTTGAAATCCATACTGCAACTGGGTCCTGCAACATAAAGGAAGTTGACT
CCATTTCCCAAGCCCAGGGGGAACTCTGAAGGAATGGGATAGGGGTCAGACACCCCTATTTTTCAGGTTC
TGTGTCTTGTTGTTTTGGATTGTGTTCTTGCTGCCACAATGTATGTATGATCTTTCAAATTCCACTCTGG
TCACCATAGTGGAGTTCACTGAATATGTCCTTTATACTGGGAGAAACAACACATCAGAACTTGAAGATGG
AAAGTTCCCTCTAGAACAGTCAGTATCACCTCTTGACTCTTAATTACCCCTTGGACTTTTTCTAAGGCCA
GCTGTAATGCTAAGTGCCAGATCCAAATCCATGAGAAAATAGTTAAATAAAGTCATTGTGACTAAAAAAA
AAA
nt 1 - nt 1613 of X98352.1
Notes:The Gpr143 (Oa1) probe used in this study by Surace et al., 2000 [PMID:11095635] was "obtained by linearizing the plasmid containing the entire coding sequence (Bassi et al., 1996 [PMID:8889556] ) with NotI and transcribing with T3 RNA polymerase". Editor's Note: Bassi et al. provide the GenBank ID.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:CD-1
Age:10.5 dpc
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Surace EM; Angeletti B; Ballabio A; Marigo V, 2000 [PMID:11095635] . Indexed and spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:11095635] Surace EM, Angeletti B, Ballabio A, Marigo V 2000 Expression pattern of the ocular albinism type 1 (Oa1) gene in the murine retinal pigment epithelium. Invest Ophthalmol Vis Sci (41):4333-7
 [ doi:10.1101/gr.6.9.880] [ PMID:8889556] Bassi MT, Incerti B, Easty DJ, Sviderskaya EV, Ballabio A 1996 Cloning of the murine homolog of the ocular albinism type 1 (OA1) gene: sequence, genomic structure, and expression analysis in pigment cells. Genome Res (6):880-5
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEMAGE