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EMAGE:5970

Gpr161 G protein-coupled receptor 161 ( MGI:2685054)
TS18 (11.5 dpc)
in situ hybridisation

Data Images
EMAGE:5970
Fig2F. [doi:10.1073/pnas.0705657105] Copyright: This image is from Matteson PG, Proc Natl Acad Sci U S A 2008; 105: 2088-93. Copyright 2008 National Academy of Sciences, U.S.A. [PMID:18250320]

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5970Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5970_wholemount__moderate.wlz
5970_wholemount__weak.wlz
5970_wholemount__notDetected.wlz
5970_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5970_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
lens vesicle
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3776467
Entity Detected:Gpr161, G protein-coupled receptor 161 ( MGI:2685054)
Sequence:sense strand is shown

>MGI:3776467
CTCGTCTACATCTGGCTCCACTCTCTCATTGGCTGTCTGCCGCCCCTATTTGGTTGGTCATCGGTGGAGT
TTGATGAGTTCAAGTGGATGTGTGTGGCCGCGTGGCACCAGGAACCCGGCTACACCATTTTCTGGCAGAT
CTGGTGTGCCCTGTTCCCCTTTCTCATCATGCTAGTGTGCTACGGTTTCATCTTCCGGGTGGCCAGGGTC
AAGGCCCGAAAGGTGCACTGTGGCACGGTGGTCACTGTGGAGGAGGACTCTCAGAGGAGCGGGAGGAAGA
ATTCTAGTACCTCCACTTCCTCCTCCGGCAGTAGGAGGAATGCCCTTCAAGGAGTGGTCTATTCAGCTAA
CCAGTGCAAAGCCCTCATCACCATCCTGGTGGTCATTGGCGCCTTCATGGTCACCTGGGGCCCCTACATG
GTTGTCATTACCTCAGAGGCACTCTGGGGGAAGAACTGTGTCTCCCCAACCCTGGAGACTTGGGCCACAT
GGCTGTCCTTTACCAGTGCCATCTGCCACCCTCTGATCTACGGACTCTGGAACAAGACTGTGCGCAAGGA
GCTCCTGGGCATGTGCTTTGGGGACCGTTATTACCGGGAATCCTTTGTGCAGCGACAGAGGACCTCCAGG
CTCTTCAGCATTTCCAACAGGATCACAGACTTGGGTCTGTCCCCACATCTCACGGCGCTCATGGCAGGCG
GACAGTCCCTGGGACACAGCAGCAGCACCGGTGACACAGGCTTCAGCTACTCTCAGGATTCAGGGACGGA
TGTGATGCTGTTGGAAGATGGCACTTCTGAGGACAACCCTCCCCAGCACTGCACTTGCCCACCCAAGAGG
AGGAGCTCCGTGACATTTGAGGACGAAGTGGAACAGATCAAAGAGGCCGCCAAGAACTCTCTTCTTCATG
TGAAAGCTGAAGTACACAAATCCTTGGACAGTTACGCAGCCAGCTTGGCTAAAGCCATTGAGGCTGAAGC
CAAAATCAACTTATTTGGGGAGGAGGCTCTGCCAGGGGTCTTGTTCACAGCACGGACCGTCCCAGGGGCT
GGCTTTGGGGGCCGTCGAGGCAGCAGAACTCTTGTGAATCAGAGGCTGCAGCTACAGAGCATCAAAGAAG
GCAATGTCTTAGCTGCAGAACAGAGATGAAAGCTTCAGAGGGGAGCGGGGCCGCAGCGGAGCTACCGGGA
CTGGTGCCTGTGCCAAGACCCTGGAACATGTCACCACTCAGAGAGGGCCAGACGCCGGGAAGGAAACATC
TGGTATGCAGCCAG
nt 670 - nt 1943 of EF197953.1
Notes:The Gpr161 probe used in this study by Matteson et al., 2008 [PMID:18250320] was a "1.3-kb antisense probe to the C-terminal tail (670-1,943 bp). To generate these constructs Gpr161 was amplified with the following primers (F: CTCGTCTACATCTGGCTCCAC; R: CTGGCTGCATACCAGATGTTTCC). The PCR products were subsequently cloned into PCR TOPOII vector (Invitrogen). Digesting with NotI and performing an in vitro transcription reaction with Sp6 generated the antisense probe. Digesting with BamHI and performing an in vitro transcription reaction with T7 generated the sense probe. ".
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:11.5 dpc
Theiler Stage:TS18
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Matteson PG; Desai J; Korstanje R; Lazar G; Borsuk TE; Rollins J; Kadambi S; Joseph J; Rahman T; Wink J; Benayed R; Paigen B; Millonig JH, 2008 [PMID:18250320] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1073/pnas.0705657105] [ PMID:18250320] Matteson PG, Desai J, Korstanje R, Lazar G, Borsuk TE, Rollins J, Kadambi S, Joseph J, Rahman T, Wink J, Benayed R, Paigen B, Millonig JH 2008 The orphan G protein-coupled receptor, Gpr161, encodes the vacuolated lens locus and controls neurulation and lens development. Proc Natl Acad Sci U S A (105):2088-93
Links:MGI:3776485 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI