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EMAGE:5988

Tyrp1 tyrosinase-related protein 1 ( MGI:98881)
TS19
in situ hybridisation

Data Images
EMAGE:5988
Fig2B. [doi:10.1073/pnas.072087599] Copyright: This image is from Loftus SK, Proc Natl Acad Sci U S A 2002 Apr 2;99(7):4471-6. Copyright 2002 National Academy of Sciences, U.S.A. [PMID:11917121]

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:5988Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
5988_wholemount__moderate.wlz
5988_wholemount__notDetected.wlz
5988_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:5988_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
pigmented retinal epithelium
detected detected
expressed in the melanocytes of the retinal pigmented epithelium
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:3793667
Entity Detected:Tyrp1, tyrosinase-related protein 1 ( MGI:98881)
Sequence:sense strand is shown

>MGI:3793667
TCTGAGCACCCCTGTCTTCTCCATGCAAAGAGCAGCATAGGAGACCTGTGTTCTGAACTCTTGCTTCGAG
AAGAATGAAATCTTACAACGTCCTCCCCCTAGCCTATATCTCCCTTTTCCTGATGCTGTTTTATCAGGTT
TGGGCTCAGTTTCCACGAGAGTGTGCCAATATTGAGGCTCTGAGACGTGGGGTGTGTTGCCCAGACCTGC
TCCCTTCCTCTGGACCGGGGACTGACCCTTGTGGCTCATCATCAGGAAGAGGCAGGTGTGTGGCTGTGAT
TGCAGACTCCCGACCCCACAGCCGCCATTATCCCCACGATGGTAAAGATGACCGAGAAGCCTGGCCTCTG
AGGTTCTTTAATAGAACATGTCAGTGCAATGATAATTTCTCAGGACACAACTGTGGGACTTGCCGTCCTG
GGTGGAGAGGAGCTGCATGCAACCAGAAAATTCTCACAGTCAGGAGAAATCTTCTAGACTTAAGTCCAGA
AGAAAAGAGCCACTTTGTCAGGGCCTTGGATATGGCGAAGCGCACAACTCACCCTCAATTTGTCATTGCC
ACAAGGAGGTTAGAAGACATACTGGGACCAGATGGCAACACACCACAATTTGAGAACATTTCCGTTTATA
ACTACTTTGTTTGGACACACTATTATTCAGTCAAAAAAACCTTCCTCGGGACAGGACAGGAAAGCTTTGG
GGATGTGGATTTCTCTCACGAAGGACCCGCTTTTCTCACATGGCACAGGTACCATCTGCTGCAGCTGGAG
AGAGACATGCAGGAGATGCTGCAGGAGCCTTCTTTCTCCCTTCCTTACTGGAATTTTGCAACTGGG
nt 199 - nt 1034 of NM_031202.2
Notes:The Tyrp1 probe template used in this study by Loftus et al., 2002 [PMID:11917121] was synthesised from B16F10Y total RNA by RT-PCR using the following primers: TYRP15'T3F-GCGCGAATTAACCCTCACTAAAGGGTCTGAGCACCCCTGTCTTCT and TYRP15'T7R-GCGCGTAATACGACTCACTATAGGGCCCAGTTGCAAAATTCCAGT. Editor's note: The primers contain either a T3 or T7 promoter.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:FVB/NJ
Theiler Stage:TS19
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + BMpurple
General Information
Authors:Loftus SK; Larson DM; Baxter LL; Antonellis A; Chen Y; Wu X; Jiang Y; Bittner M; Hammer JA rd; Pavan WJ, 2002 [PMID:11917121] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1073/pnas.072087599] [ PMID:11917121] Loftus SK, Larson DM, Baxter LL, Antonellis A, Chen Y, Wu X, Jiang Y, Bittner M, Hammer JA, Pavan WJ 2002 Mutation of melanosome protein RAB38 in chocolate mice. Proc Natl Acad Sci U S A (99):4471-6
Links:MGI:3793668 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI