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EMAGE:6039

Rab38 RAB38, member of RAS oncogene family ( MGI:1919683)
TS19 (11.5 dpc)
in situ hybridisation

Data Images
EMAGE:6039
Fig 2F. [doi:10.1073/pnas.072087599] Copyright: This image is from Loftus SK; Larson DM; Baxter LL; Antonellis A; Chen Y; Wu X; Jiang Y; Bittner M; Hammer JA rd; Pavan WJ, Proc Natl Acad Sci U S A 2002 Apr 2;99(7):4471-6. [PMID:11917121] Copyright 2002 National Academy of Sciences, U.S.A.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6039Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6039_wholemount__moderate.wlz
6039_wholemount__weak.wlz
6039_wholemount__notDetected.wlz
6039_wholemount__strong.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6039_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
pigmented retinal epithelium
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1905244
Entity Detected:Rab38, RAB38, member of RAS oncogene family ( MGI:1919683)
Sequence:sense strand is shown

>MGI:1905244
GACATAGAGCTCCGGTCTCCGTCGGTGCCCAGCCCCGGCTGTGCTTCCCAGAGCAAGCTCCAGGCTCCGC
AAGACCCGCGGGCCTCCAGGATGCAGACACCTCACAAGGAGCACCTGTACAAGCTGCTGGTGATCGGCGA
CCTGGGTGTGGGCAAGACCAGCATTATCAAGCGCTATGTGCACCAAAACTTCTCCTCGCACTACCGGGCC
ACCATTGGTGTGGACTTCGCGCTGAAGGTGCTCCACTGGGACCCAGAGACGGTGGTGCGCTTGCAGCTCT
GGGACATTGCTGGTCAAGAAAGATTTGGAAACATGACAAGAGTTTATTACCGGGAAGCTATGGGGGCATT
TATTGTTTTTGATGTCACCAGACCAGCCACATTTGAAGCCGTGGCAAAGTGGAAAAATGATTTGGACTCA
AAGTTAACGCTCCCTAATGGTAAGCCAGTGTCAGTGGTTCTGTTGGCCAACAAATGTGACCAAGGGAAGG
ATGTGCTTATGAACAATGGACTCAAGATGGACCAGTTCTGCAAGGACGATGGCTTCGTAGGATGGTTTGA
AACATCAGCACAGAGAAACATAAACATTGATGAAGCCTCAAGATGCCGTGGTCAGCACATACTTGCAAAT
GAGTGTGACCTCCTAGAGTCTATAGAACCGGACATTGTGAAGCCCCATCTCACATCGCCCAAGGTTGTCA
GCTGCTCTGGCTGTGCCAAATCCTAGAAGCTCCTCTGCTGGCATATGACAGACAGAACCCGTGGCCTCAT
GAATCGTGCTTCAGTTTTTCTTATTACCATTTTGGGTAAGCGTCAGGATAGGGAAGCACATGTGACAAGC
CAAAGATACATGACTGTATGGTTCCTGTCAAAGAGGAACAGCAAATGTTCTTTATGTGTTTTCCCACCCC
ATCAGCACAGTGTTTACAAGCTTTTAAAATATTAGTCTGTCACAATATGCTGTTTTATCATTGAGCAAAG
CCACTCAGGGACACAGACAGCCCTAATATTTGTTCCTTTAAATCAACAAAGGCTTCTGGTCTTCTTGAGA
AGGGGAATAACAGAGCAAGGCAGAGGTCAAGCTAAGTGTGGGGATTTGTCTTGCCCTGGTGTGTCTTTGT
TCAGGTATCAATTTGTTCCCGGGTGGTCTGATAGGTCTATTAAATAGAAACCATTCATGGTAGACCTAAG
GGTTGTCTGTGATGTTTCTCTTCAGAGTCGTGTGCACAGGCAGCCTGGGCTTTTGTTGTCACTTGCTGTG
CCCTGAATGCTGGTTTAACTGAAAACTGTATGGAAAGATCTGCTCCCTGTATGTGCCTTTCTTTCAGCTT
CCTCTGACTCAAGCTGCAGGACTCTTCTGTATGTGGAAGATATATTATATATATTTTTCACAAGTGAAAA
ATAAAACATTAAAAATGCTGTTTCCCTGTTTCTGAT
nt 1 - nt 1436 of AK009296.1
Notes:The production of the Rab38 probe used in this study by Loftus et al., 2002 [PMID:11917121] is described as follows: "Reverse-transcribed digoxigenin-conjugated probes were made from linearized plasmids. The following DNA source was used for probe synthesis: Rab38, RIKEN cDNA clone 23-10011-F14."
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:FVB/NJ
Age:11.5 dpc
Theiler Stage:TS19
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Fixation:4% paraformaldehyde
Staining procedure:alkaline phosphatase + BMpurple
General Information
Authors:Loftus SK; Larson DM; Baxter LL; Antonellis A; Chen Y; Wu X; Jiang Y; Bittner M; Hammer JA rd; Pavan WJ, 2002 [PMID:11917121] , Indexed by GXD, Spatially Mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1073/pnas.072087599] [ PMID:11917121] Loftus SK, Larson DM, Baxter LL, Antonellis A, Chen Y, Wu X, Jiang Y, Bittner M, Hammer JA, Pavan WJ 2002 Mutation of melanosome protein RAB38 in chocolate mice. Proc Natl Acad Sci U S A (99):4471-6
Links:MGI:3793690 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI