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EMAGE:6185

Ndn necdin ( MGI:97290)
TS18 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:6185 EMAGE:6185 EMAGE:6185 EMAGE:6185 EMAGE:6185
Raw signal output, as movie. All sections along the X-axis, as movie. All sections along the Y-axis, as movie. All sections along the Z-axis, as movie. Photograph prior to 3D imaging.
EMAGE:6185 EMAGE:6185
Photograph prior to 3D imaging. Sample morphology following 3D imaging, as movie

View 3D opt image: EMAGE genex expression entry
Download 3D images in woolz format
Expression pattern clarity: three stars
Notes:
This is a traditionally produced wholemount in situ hybridisation stained using alkaline phosphatase + BM Purple. It has been imaged using Optical Projection Tomography. The visible channel depicting the signal has been false-coloured green and the fluorescence channel depicting autofluorescence has been false-coloured blue.
Expression Pattern Description
Text Annotation:
StructureLevelPatternNotes
embryo
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:Ndn_probeB
Entity Detected:Ndn, necdin ( MGI:97290)
Sequence:sense strand is shown

>Ndn_probeB
CCAGGGGCACACTGATAGTTTCTGACCCATACTAGGGCTGTGTAAGGGTGGGGTTGAGTCATTAGAGTAT
CCCAAATCCACAGTGCAGTATTTCATGTATAATTTTTAAGTTTTCCATACAGTGCTTTTGTACCTTGTAA
TGCTATTCATTTGTGTACTCGTGTAGTGTTTAAGATTGATGCATGTGTGATAAGTATTTGGTACTTTCAC
TTTTGTGCTTTCGTGCATTTTTGTACAAGAGATGTGCTGTGCTAAACTTGTGAAATACATTGAGGTGTTC
TGTATCTTGTTCTTTGTATGGGACTGATGATCTGTATCGACAAAGAAGGCCCTGGAGAGTTAGCAGGACT
TAACAGCAACGCAGACCTGAGCAAGAGAAAGGTCAAGGCCTTTCTCCATATGACTTCAACTGGCACAGGA
AGCATCCATGTGGAATGGACTGATTTGAACTGGACTGTTCTCAGTGTAGGCACTTAGCACCCTTTACAAA
ACATGTATGCAACCCCACCATAA
nt 69494278 - nt 69494790 of NC_000073.5
Notes:This probe was transcribed from template produced by a PCR of whole genomic DNA using primers incorporating T3 and T7 promotors. The probes were transcribed using the T7 polymerase. Primers: T3: 5' AATTAACCCTCACTAAAGGCCAGGGGCACACTGATAGTT 3' T7: 5' TAATACGACTCACTATAGGTTATGGTGGGGTTGCATACAT 3' Product length: 513bp
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:CD-1
Age:10.5 dpc
Theiler Stage:TS18
Mutations:none (wild-type)
Preparation:opt
Procedures
Fixation:4% paraformaldehyde
Embedding:agarose
Staining procedure:alkaline phosphatase + BMpurple
General Information
Authors:Peter Branney, David R Fitzpatrick
Principal investigator:David R FitzPatrick, Medical Research Council, Human Genetics Unit MRC Western General Hospital Crewe Road, Edinburgh, Scotland EH4 2XU
Submitted by:Peter Branney, Medical Research Council, Human Genetics Unit MRC Western General Hospital Crewe Road, Edinburgh, Scotland EH4 2XU
Experiment type:screen
Links: Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceFACEBASE