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EMAGE:6236

EG668628 (EG668628)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:6236 EMAGE:6236 EMAGE:6236 EMAGE:6236 EMAGE:6236
"Pseudo-wholemount" of euxassay_016084. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_016084_01 euxassay_016084_02 euxassay_016084_03 euxassay_016084_04
EMAGE:6236 EMAGE:6236 EMAGE:6236 EMAGE:6236 EMAGE:6236
euxassay_016084_05 euxassay_016084_06 euxassay_016084_07 euxassay_016084_08 euxassay_016084_09
EMAGE:6236 EMAGE:6236 EMAGE:6236 EMAGE:6236 EMAGE:6236
euxassay_016084_10 euxassay_016084_11 euxassay_016084_12 euxassay_016084_13 euxassay_016084_14
EMAGE:6236 EMAGE:6236 EMAGE:6236 EMAGE:6236 EMAGE:6236
euxassay_016084_15 euxassay_016084_16 euxassay_016084_17 euxassay_016084_18 euxassay_016084_19
EMAGE:6236 EMAGE:6236 EMAGE:6236 EMAGE:6236 EMAGE:6236
euxassay_016084_20 euxassay_016084_21 euxassay_016084_22 euxassay_016084_23 euxassay_016084_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6236Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6236_wholemount_strong.wlz
6236_wholemount_moderate.wlz
6236_wholemount_weak.wlz
6236_wholemount_possible.wlz
6236_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6236_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T39864
Entity Detected:EG668628, (EG668628)
Sequence:sense strand is shown

>T39864
TGAGGTATCCCCTGATCATCTTCGTGGTGGGGGGGCCCGGCTGCGGGAAAGGGACCCAGTGCAGAAACAT
GGCTCTGAAATACGGCTTCTACCATGTGGAGCTGGGCCAGCTGCTGCGGGAGGAGGCTCAGAGAAGCACC
CAGAGGGGACGGCAGATCCGGGACATCATGCAGAAGGGACTCCTGGTACCCACGGGTTTGATTCTGGACA
TGATCAGTGACAACTTGTTGTCTTATCCAAAGATCCGCGGCTTCCTCATCGATGGCTTCCCCAGAGAGCT
GGAACAGGCCAAAGAGTTTGAGCGGATTGTGGGCAGGGCCCCCAACATGGTCATAGTGTTTGACTGCTCC
ATGGAGACCATGGTGCGCAGAGTGCTACGACGAGGACAGGTGGAG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 85486. Forward Primer - name:085486_F_cDNA_LOC383260, sequence:TGAGGTATCCCCTGATCATCTT; Reverse Primer - name:085486_N_SP6_cDNA_LOC383260, sequence:CTCCACCTGTCCTCGTCGTAG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6237 same embryo
 EMAGE:6241 same embryo
 EMAGE:6239 same embryo
 EMAGE:6238 same embryo
 EMAGE:6240 same embryo
 EurExpress:euxassay_016084 same experiment
  Allen Brain Atlas same gene
  BioGPS same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS