EMAGE mouse gene expression spatial database

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EMAGE:6346

Nnt nicotinamide nucleotide transhydrogenase ( MGI:109279)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_007280. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_007280_01	euxassay_007280_02	euxassay_007280_03	euxassay_007280_04

euxassay_007280_05	euxassay_007280_06	euxassay_007280_07	euxassay_007280_08	euxassay_007280_09

euxassay_007280_10	euxassay_007280_11	euxassay_007280_12	euxassay_007280_13	euxassay_007280_14

euxassay_007280_15	euxassay_007280_16	euxassay_007280_17	euxassay_007280_18	euxassay_007280_19

euxassay_007280_20	euxassay_007280_21	euxassay_007280_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

6346_wholemount_strong.wlz

6346_wholemount_moderate.wlz

6346_wholemount_weak.wlz

6346_wholemount_possible.wlz

6346_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:6346_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

upper arm muscle

strong

regional

strong expression: see section 01 02 03 04 20 22 moderate expression: see section 21

upper leg muscle

strong

regional

strong expression: see section 03 04 05 06 07 08 19 20 moderate expression: see section 21 22

diaphragm

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

vertebral axis musculature

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

esophagus

strong

regional

strong expression: see section 10 11

tongue muscle

strong

regional

strong expression: see section 09 10 11 12 13 14

left lung

strong

regional

strong expression: see section 02 03 04 05 06 07 08 09 10 11 12

right lung

strong

regional

strong expression: see section 13 14 15 16 17 18 19 20 21

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T2080
Entity Detected:	Nnt, nicotinamide nucleotide transhydrogenase ( MGI:109279)
Sequence:	sense strand is shown >T2080 TGGCCTCGAGGCCAGATTCGGACGAGGGAAGACCCCAATTCTATAATTGCAGGCATGCCGGTCCTTGAGG TCTGGAAGTCCAAACAGGTCATTGTCATGAAGAGGTCCCTTGGCGTTGGCTACGCTGCCGTGGACAATCC GATCTTCTACAAACCTAACACAGCTATGCTTCTGGGGGACGCCAAGAAGACATGTGACGCTCTGCAGGCC AAAGTTCGGGAATCCTATCAGAAGTGAAGATTGAAGATCCAGCCGATGCCTTCGGTTGCAGGAACAGAGA AAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCA AGATCAGCACCCCATGCTTCTCAAAAAGCATTGGAAATTCTCATCGCCTACCTATGTACTGTCGCCATTG CCCAAAAAGCAAGAGTATTTTGTCCACAGTGAAAAAGCAGCCTCACTTTAGATGCAACCCCACTGGATTC TTAAAATTCCCTTTCAGTAGCTAGAAATCAGTTCA
Notes:	The probe template was PCR amplified from IMAGE:846728 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:846728 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:6343 same embryo
	EMAGE:6347 same embryo
	EMAGE:6345 same embryo
	EMAGE:6344 same embryo
	EurExpress:euxassay_007280 same experiment
	MGI:4826738 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source