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EMAGE:643

Pax1 paired box gene 1 ( MGI:97485)
TS16
in situ hybridisation

Data Images
EMAGE:643 EMAGE:643
Fig 2C Wallin et al, 1996 [PMID:8565834] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd. who owns the copyright. Fig 2D Wallin et al, 1996 [PMID:8565834] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
The whole-mount stained embryo in image C was subsequently sectioned to produce image D. Abbreviations: 1, 2, 3 and 4: the first, second, third and fourth pharyngeal pouch, respectively.
Expression Pattern Description
Spatial Annotation:
EMAGE:643Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
643_wholemount_strong_3D_1.wlz
643_wholemount_moderate_3D_1.wlz
643_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:643_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
3rd branchial pouch endoderm
strong strong
regionalExpression is in the endodermal epithelium
1st branchial pouch
strong strong
2nd branchial pouch endoderm
strong strong
regionalExpression is in the endodermal epithelium
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1309770
Entity Detected:Pax1, paired box gene 1 ( MGI:97485)
Sequence:sense strand is shown

>MGI:1309770
CAACGGCCGTCCCCTGCCCAATGCCATCCGCCTACGAATCGTGGAGCTAGCACAGCTGGGTATCCGACCC
TGTGACATCAGTAGGCAACTGCGGGTCTCTCATGGCTGCGTGAGCAAAATCCTGGCGCGCTACAACGAGA
CCGGCTCCATCCTGCCCGGGGCCATCGGGGGCAGCAAACCTCGAGTTACCACCCCCAATGTAGTGAAGCA
CATCCGGGACTACAAACAGGGGGATCCTGGCATCTTTGCCTGGGAGATCCGTGACCGGCTACTGGCTGAT
GGCGTTTGTGACAAGTACAACGTGCCCTCTGTGAGCT
nt 291 - nt 607 of NM_008780.1
Notes:The probe used in this study by Wallin et al, 1996 [PMID:8565834] is described as being "generated from a HincII-SacI paired box fragment".
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:wholemount plus section of wholemount
Procedures
General Information
Authors:Wallin et al, 1996 [PMID:8565834] . Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:8565834] Wallin J, Eibel H, Neubuser A, Wilting J, Koseki H, Balling R 1996 Pax1 is expressed during development of the thymus epithelium and is required for normal T-cell maturation. Development (122):23-30
Links:MGI:1333916 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI