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EMAGE:660

Sox9 SRY-box containing gene 9 ( MGI:98371)
TS18 (10.5 dpc)
in situ hybridisation

Data Images
EMAGE:660
Figure 5A of Peters et al., 1995 [PMID:10556064] Copyright: This image is from Development and is displayed with the permission of The Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:660Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
660_wholemount_strong_3D_1.wlz
660_wholemount_moderate_3D_1.wlz
660_wholemount_weak_3D_1.wlz
660_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:660_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
tail somite
detected detected
regionalA segmented expression pattern is detected in the somites
trunk somite
detected detected
regionalA segmented expression pattern is detected in the somites
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:32571
Entity Detected:Sox9, SRY-box containing gene 9 ( MGI:98371)
Sequence:sense strand is shown

>MGI:32571
CGGGCGAGCACTCTGGGCAATCTCAGGGTCCGCCGACCCCACCCACCACTCCCAAAACCGACGTGCAAGC
TGGCAAAGTTGATCTGAAGCGAGAGGGGCGCCCTCTGGCAGAGGGGGGCAGACAGCCCCCCATCGACTTC
CGCGACGTGGACATCGGTGAACTGAGCAGCGACGTCATCTCCAACATTGAGACCTTCGACGTCAATGAGT
TTGACCAATACTTGCCACCCAACGGCCACCCAGGGGTTCCGGCCACCCACGGCCAGGTCACCTACACTGG
CAGTTACGGCATCAGCAGCACCGCACCCACCCCTGCGACCGCGGGCCACGTGTGGATGTCGAAGCAGCAG
GCGCCGCCCCCTCCTCCGCAGCAGCCTCCGCAGGCCCCGCAAGCCCCACAGGCGCCTCCGCAGCAGCAAG
CACCCCCGCAGCAGCCGCAGGCACCCCAGCAGCAGCAGGCACACACGCTCACCACGCTGAGCAGCGAGCC
AGGCCAGTCCCAGCGAACGCACATCAAGACGGAGCAGCTGAGCCCCA
nt 974 - nt 1510 of NM_011448.1
Notes:The Sox9 probe used in this study by Peters et al., 1999 [PMID:10556064] was previously described by Wright et al., 1995 [PMID:7704017] as follows, "antisense and sense RNA probes were prepared from subclones of Sox9 cDNA 3' to the HMG box but not containing any HMG box or poly-A sequences (nucleotides 972 to 1508, Fig. 1)."
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.5 dpc
Theiler Stage:TS18
Mutations:none (wild-type)
Preparation:wholemount
Procedures
Staining procedure:alkaline phosphatase
General Information
Authors:Peters et al., 1995 [PMID:10556064] Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:10556064] Peters H, Wilm B, Sakai N, Imai K, Maas R, Balling R 1999 Pax1 and Pax9 synergistically regulate vertebral column development. Development (126):5399-408
 [ doi:10.1038/ng0195-15] [ PMID:7704017] Wright E, Hargrave MR, Christiansen J, Cooper L, Kun J, Evans T, Gangadharan U, Greenfield A, Koopman P 1995 The Sry-related gene Sox9 is expressed during chondrogenesis in mouse embryos. Nat Genet (9):15-20
Links:MGI:1349751 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI