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EMAGE:6648

Atg16l1 autophagy-related 16-like 1 (yeast) ( MGI:1924290)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
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"Pseudo-wholemount" of euxassay_002254. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_002254_01 euxassay_002254_02 euxassay_002254_03 euxassay_002254_04
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euxassay_002254_05 euxassay_002254_06 euxassay_002254_07 euxassay_002254_08 euxassay_002254_09
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euxassay_002254_10 euxassay_002254_11 euxassay_002254_12 euxassay_002254_13 euxassay_002254_14
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euxassay_002254_15 euxassay_002254_16 euxassay_002254_17 euxassay_002254_18 euxassay_002254_19
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euxassay_002254_20 euxassay_002254_21 euxassay_002254_22 euxassay_002254_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6648Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6648_wholemount_strong.wlz
6648_wholemount_moderate.wlz
6648_wholemount_weak.wlz
6648_wholemount_possible.wlz
6648_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6648_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T3276
Entity Detected:Atg16l1, autophagy-related 16-like 1 (yeast) ( MGI:1924290)
Sequence:sense strand is shown

>T3276
TGGCCTCGAGCCAGATTCGGACGAGGATGACCTGCTAAAAGTCATCGACCTCCGGACAAATGCAGTCAAA
CAGACATTCAGTGCGCCTGGATTCAAATGCGGCTCTGACTGGACCCGGGTTGTCTTCAGCCCTGATGGCA
GTTACGTGGCAGCAGGCTCAGCCGAGGGTTCTCTTTATGTCTGGAGTGTGCTGACAGGGAAAGTGGAGAA
GGTTCTTTCAAAACAGCACAGCTCTTCTATCAATGCGGTGGCGTGGGCCCCCTCGGGCTTACATGTTGTC
AGTGTGGACAAAGGAAGCAGAGCTGTGCTGTGGGCACAGCCTTGATGCTGCACCCTTAGGAGCACCGTGG
GACCCCACGGCCCATCTTGGAGAATGATGTGTCCTCCCAGAAAAGAGCTGAAGCCATGTGGTGCCGTAGC
TTTCTTGAGAACTTTGACTTAAGGTCTCTAATGGCTGAGAAGAACCAACACTGAACCAAACTGACTCTGC
AAGTCCCTAGCAGAGGTTCAGATTTTTGTCTGCATTTGGGTGGGAAACACTACTA
Notes:The probe template was PCR amplified from IMAGE:2780163 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2780163 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6649 same embryo
 EMAGE:6647 same embryo
 EurExpress:euxassay_002254 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS