EMAGE mouse gene expression spatial database

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EMAGE:6655

Trim13 tripartite motif-containing 13 ( MGI:1913847)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002225. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002225_01	euxassay_002225_02	euxassay_002225_03	euxassay_002225_04

euxassay_002225_05	euxassay_002225_06	euxassay_002225_07	euxassay_002225_08	euxassay_002225_09

euxassay_002225_10	euxassay_002225_11	euxassay_002225_12	euxassay_002225_13	euxassay_002225_14

euxassay_002225_15	euxassay_002225_16	euxassay_002225_17	euxassay_002225_18	euxassay_002225_19

euxassay_002225_20	euxassay_002225_21	euxassay_002225_22	euxassay_002225_23	euxassay_002225_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

6655_wholemount_strong.wlz

6655_wholemount_moderate.wlz

6655_wholemount_weak.wlz

6655_wholemount_possible.wlz

6655_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:6655_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T2973
Entity Detected:	Trim13, tripartite motif-containing 13 ( MGI:1913847)
Sequence:	sense strand is shown >T2973 TGGCCTCGAGCCAGATTCGGCACGAGGTCTTANAGGGGAATGTGCGGAATTCCCTGTGGAGACCATCTCC CTTCAAGTGTCCTACCTGCCGTAAGGAAACCTCAGCTACTGGAGTCAACAGTCTGCAGGTCAATTACTCC CTAAAGGGTATCGTGGAGAAATACAACAAAATCAAGATTTCTCCCAAGATGCCAGTGTGCAAAGGACATT TGGGGCAGCCTCTCAACATCTTCTGCGTAACTGATATGCAGCTGATTTGTGGGATCTGTGCTACTCGAGG CGAGCACACCAAGCATGTCTTCTCTTCTATTGAAGATGCCTACGCTCGAGAAAAGAATGCCTTTGAGTCC CTCTTTCAGAGTTTCGAGACTTGGCGCCGGGGAGATGCTCTTTCCCGCTTGGATACTTTGGAAACAAACA AGAGGAAAGCCCTCCAGTTACTCACGAAGGATTCAGATAAAGTAAAGGAGTTTTTTGAGAAGTTACAGCA CACCTTGGATCAAAAGAAGAATGAAATCCTGTCTGACTTTGAAACTATGAAGCTTGCAGTTATGCAAACC TATG
Notes:	The probe template was PCR amplified from IMAGE:1532839 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1532839 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:6653 same embryo
	EMAGE:6652 same embryo
	EMAGE:6651 same embryo
	EMAGE:6654 same embryo
	EMAGE:6650 same embryo
	EurExpress:euxassay_002225 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source