EMAGE mouse gene expression spatial database

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EMAGE:6832

Celf2 CUGBP, Elav-like family member 2 ( MGI:1338822)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002326. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002326_01	euxassay_002326_02	euxassay_002326_03	euxassay_002326_04

euxassay_002326_05	euxassay_002326_06	euxassay_002326_07	euxassay_002326_08	euxassay_002326_09

euxassay_002326_10	euxassay_002326_11	euxassay_002326_12	euxassay_002326_13	euxassay_002326_14

euxassay_002326_15	euxassay_002326_16	euxassay_002326_17	euxassay_002326_18	euxassay_002326_19

euxassay_002326_20	euxassay_002326_21	euxassay_002326_22	euxassay_002326_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

6832_wholemount_strong.wlz

6832_wholemount_moderate.wlz

6832_wholemount_weak.wlz

6832_wholemount_possible.wlz

6832_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:6832_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

brain

strong

homogeneous

strong expression: see section 01 02 03 04 05 moderate expression: see section 06 07 08 09 10 13 14 16 17 18 19 20 21 22 23 weak expression: see section 11 12 15

spinal cord

moderate

homogeneous

moderate expression: see section 07 08 09 10 13 14 weak expression: see section 11 12 15

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T3403
Entity Detected:	Celf2, CUGBP, Elav-like family member 2 ( MGI:1338822)
Sequence:	sense strand is shown >T3403 GATCACACACATTCTCAGTCTCTCTATGGTGGTGTGTAGGTACACGTGTAGAAACACAAGAGAATACCAG TTGTATTTCATAGACCATCTCGTTCACAATCTATTTAGTTATTAATGATATAAATCTCAAAAAAAAATCT TGACTTTTTTTTTCCCCCCATGGAAGCCAACTGCCCTCCTTCCTCTTAACCCACCTGCGGCCCCCGCAGA GGCTCGGGTCAGGCAGGTACTTTCTGTTGAGCTCGGTTTCTGATTTTGCAGGCGACCAAGACCGTCCATT GAGGCGAGGGCTTGGTTTTGCATGTTTCATTGTTAGAAAGTTAGCCTTCCTCAGAGACAGACTGTCCTTC CTCTCTCAGTATCAAAAGGAAACGCTGCAAGGGTGCGCAGGGCCTGTTTCCGGAAGACAAAACACAGGGA AACTGCATTTTTAAAAATCAAGTGTAAAGCATATAGACTTTTAAAACTCACTCAGAGAACTCTGATCAGA TGGCACCTCCACGGTGTGACAAGTTCA
Notes:	The probe template was PCR amplified from IMAGE:3025539 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:3025539 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:6831 same embryo
	EMAGE:6835 same embryo
	EMAGE:6833 same embryo
	EMAGE:6834 same embryo
	EMAGE:6830 same embryo
	EurExpress:euxassay_002326 same experiment
	MGI:4824122 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source