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EMAGE:6981

Ier3 immediate early response 3 ( MGI:104814)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:6981 EMAGE:6981 EMAGE:6981 EMAGE:6981 EMAGE:6981
"Pseudo-wholemount" of euxassay_004526. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004526_01 euxassay_004526_02 euxassay_004526_03 euxassay_004526_04
EMAGE:6981 EMAGE:6981 EMAGE:6981 EMAGE:6981 EMAGE:6981
euxassay_004526_05 euxassay_004526_06 euxassay_004526_07 euxassay_004526_08 euxassay_004526_09
EMAGE:6981 EMAGE:6981 EMAGE:6981 EMAGE:6981 EMAGE:6981
euxassay_004526_10 euxassay_004526_11 euxassay_004526_12 euxassay_004526_13 euxassay_004526_14
EMAGE:6981 EMAGE:6981 EMAGE:6981 EMAGE:6981 EMAGE:6981
euxassay_004526_15 euxassay_004526_16 euxassay_004526_17 euxassay_004526_18 euxassay_004526_19
EMAGE:6981 EMAGE:6981 EMAGE:6981
euxassay_004526_20 euxassay_004526_21 euxassay_004526_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:6981Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
6981_wholemount_strong.wlz
6981_wholemount_moderate.wlz
6981_wholemount_weak.wlz
6981_wholemount_possible.wlz
6981_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:6981_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5808
Entity Detected:Ier3, immediate early response 3 ( MGI:104814)
Sequence:sense strand is shown

>T5808
TAAATTATGTGCCACTCGCGCAACCATCTCCACACCATGACTGGCCTGAGGGCCCCTTCTCCAGCTCCCT
CCACCGGCCCGGAACTCCGGCGGGGCTCTGGTCCCGAGATTTTCACCTTCGACCCTCTCCCGGAGCGGGC
CGTGGTGTCCACCGCGCGTTTGAACACTTCTCGCGGGCACCGAAAACGCAGCCGAAGGGTGCTCTACCCT
CGAGTGGTCCGGCGCCAGCTACCAACCGAGGAACCCAACATTGCCAAGAGGGTCCTCTTTCTCCTGTTCG
CCATCATCTTCTGCCAGATTTTGATGGCTGAAGAGGGTGTGTCGCAGCCCCTGGCTCCGGAGGATGCTAC
CAGCGCCGTGACACCTGAGCCCATTTCTGCGCCCATTACTGCGCCCCCGGTCCTCGAGCCTTTGAACCTG
ACCTCGGAGTCCTCGGATTATGCGCTGGATCTTAAAGCTTTTCTCCAGCAACATCCGGCGGCCTTCTAAA
CGCGATGGGTCACAGTCCGAAGAAACAAAGGCACCATGGATGGGTACCTGGTGCGAGAGAACGTATCCCA
AACTGGGATTTCTAAGGCAACGCTAACTCAGAACACTACCACCAAGAGACACCGCGGGTCCTGGCTAGGC
CCACTGGGGACGGACAGAGACTTTCTCCGTGTCTAATTAATATTTATGTATTTATGTATATCCTCCTAGG
TGAAGGAGGGGTGTATGTAATATTTATTCTAACTTATGCAGGGGTGCGAGATATGCCTCCCTGCTGTAAC
ACAGATATTTATTACGATTTATAGGGTCGGTAAGACAGAGTTGTGGGAGGGAGGACCCGGGTGGTAGGAC
TCCCAGCTTGGGGATTAGTCTGGGGGGGGGTGTAATAAGATTAGGGGTAACACTCCGTCTTCCAGCACTT
CAACTCTGTAGTCTGTTGTAAGGCTTTGGAAGACCCTTGGGAATCCGGCCTTTGATGTCTTCTGGTTGCT
TCTCAGGGGCAGCTGCAGGAGTCTTGGGTCCATGGATTGTCAGAGGGCGGCTGTCTGGGGTCGCCTAGTA
TGTATGTTCTGTGAACACGAATAAACTTGATTTGCCTGTCAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:2811734 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:2811734 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:6986 same embryo
 EMAGE:6985 same embryo
 EMAGE:6984 same embryo
 EMAGE:6982 same embryo
 EMAGE:6983 same embryo
 EurExpress:euxassay_004526 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS