EMAGE mouse gene expression spatial database

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EMAGE:7032

B230120H23Rik RIKEN cDNA B230120H23 gene ( MGI:2443258)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002557. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002557_01	euxassay_002557_02	euxassay_002557_03	euxassay_002557_04

euxassay_002557_05	euxassay_002557_06	euxassay_002557_07	euxassay_002557_08	euxassay_002557_09

euxassay_002557_10	euxassay_002557_11	euxassay_002557_12	euxassay_002557_13	euxassay_002557_14

euxassay_002557_15	euxassay_002557_16	euxassay_002557_17	euxassay_002557_18	euxassay_002557_19

euxassay_002557_20	euxassay_002557_21	euxassay_002557_22	euxassay_002557_23	euxassay_002557_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7032_wholemount_strong.wlz

7032_wholemount_moderate.wlz

7032_wholemount_weak.wlz

7032_wholemount_possible.wlz

7032_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7032_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5165
Entity Detected:	B230120H23Rik, RIKEN cDNA B230120H23 gene ( MGI:2443258)
Sequence:	sense strand is shown >T5165 CCACGCGTCCGTTCAACTCCTGACTCCGGCGGAAGCGTGGGAGCCGCGCGGGCCGCCGTCCCCGACCCCC GCCGCCGCTCGCGCCCGATCCGGGAGCCAGATTTTGTGGACGTTTACTACTTTGTCATTATGAGATGTCG TCTCTCGGAGCCTCCTTTGTGCAAATTAAGTTCGACGACTTGCAGTTTTTTGAAAACTGCGGTGGAGGAA GTTTTGGGAGTGTGTATCGAGCCAAATGGATATCACAGGACAAGGAGGTGGCTGTAAAGAAGTTACTCAA AATAGAGAAAGAGGCAGAAATCCTGAGCGTCCTCAGTCACAGAAACATCATCCAGTTTTATGGAGTGATT CTGGAACCTCCCAACTATGGCATCGTCACAGAATATGCTTCCCTGGGCTCCCTGTATGATTACATTAACA GCAACAGGAGTGAAGAGATGGACATGGAACACATCATGACCTGGGCCACTGACGTAGCCAAAGGGATGCA TTACTTACACATGGAAGCTCCTGTCAAGGTGATCCACAGAGACCTCAAGTCAAGAAACGTTGTTATCGCT GCTGACGGAGTGCTGAAGATCTGTGACTTCGGTGCCTCGCGGTTCCATAACCACACAACACACATGTCCT TGGTTGGAACTTTCCCATGGATGGCTCCAGAAGTTATCCAGAGTCTCCCTGTGTCTGAAACCTGTGACAC GTATTCCTATGGTGTGGTTCTCTGGGAGATGCTAACAAGGGAGGTCCCCTTTAAAGGTTTGGAAGGATTA CAAGTAGCTTGGCTTGTAGTGGAAAAAAACGAGAGATTAACCATTCCAAGCAGCTGCCCCAGAAGCTTTG CTGAACTGCTACACCAGTGTTGGGAGGCTGATGCCAAGAAACGGCCATCGTTCAAGCAAATCATTTCAAT CCTGGAGTCTATGTCAAATGACACGAACCTTCCTGACCAGTGTAACTCATTTTTACACAACAAGGCGGAG TGGAGGTGTGAAATTGAGGCAACCCTTGAGCGACTGAAGAAACTAGAGCGAGATCTCAGCTTTAAAGAGC AGGAGCTCAAAGAACGGGAGAGACGTCTCAAGATGTGGGAGCAGAAGCTGACGGAGCAATCCAACACCCC GCTGCTGCCTTCCTTTGAGATTGGTGCGTGGACTGAAGACGATGTGTATTTTTGGGTTCAGCAGCTCGTC AGAAAAGGCGAGTCTTCAGTAGAGATGAGTGGATACGCAAGTTTGTTTAAGGAGAACAACATCACAGGCA AGCGGTTGCTGCTTCTGGAAGAGGAAGATCTGAAAGACATGGGCATCGTCTCCAAGGGACACATCATTCA CTTTAAGTCAGCTATTGAGAAGCTAACCCACGATTATCTGAACCTGTTTCACTTCCCACCACTGATTAAG GATTCAGGAGGGGAACCTGAAGAAAATGAGGAAAAAATAGTGAACCTTGAACTTGTTTTTGGTTTTCACT TGAAGCCAGGAACTGGCCCACAGGATTGCAAATGGAAAATGTATATGGAGATGGATGGGGACGAAGTTGC AATCACGTACATAAAAGATGTGACTTTCAACACGAGCCTCCCTGATGCAGAGATTTTAAAGATGACAAAG CCACCATTTGTAATGGAGAAGTGGATCGTGGGAATAGCGGAGGATCAGACTGTGGAGTGCACGGTCACCT ATGAGAATGATGTCAGAACACCAAAACTCACTAAGCACGTGCACTCCATACAGTGGGACAGAACGAAGCC TCAGGATGAGGTGAAGGCGGTCCAGCTTGCCATTCAGACTCTGTTCTCCAGCTCAGAGGGCAACCCTGGC AGCAGATCCGACTCCAGTGCGGACTGCCAATGGTTAGACACTCTGCGCATGCGGCAGATTGCATCCCACA CTTCTCTACAGCGTTCCCAAAGCAACCCTATCTTGGGGTCTCCTTTCTTCCCTTACTTTGCCAACCAGGA TTCCTATGCTGCTGCGGTGAGGAGGACCCAGACTCCGGTGAAGTACCAGCAGATTACACCAAGCATCAAC CCTTCCCGGAGCTCCTCCCCCACGCAGTATGGGCTGTCCAGAAACTTCTCCTCCCTGAACCTCAGCTCCA GGGACAGCGGCTTCTCCAGCCTCAATGACAGCTCCTCCGAGAGGGGCCGCTACTCAGACCGAAGCAGAAA CAAGTACTACCGTGGTAGTGTGTCCCTCAATTCTTCCCCGAAAGGAAGATATGGTGGGAAAAGTCAGCAT TCCACACCTTCAAGAGAAAGATATTCTGGAAAGTTCTACAGGCTGCCCCAGTCAGCGCTGAACACTCATC AGTCCCCTGACTTCAAGAGGAGCCCAAATGACCATGACCGCCGTGTGCCCAGGACCATACCCGGGATGCC TCTGCACCCTGAGACTGCCTCCAAAGCAGGGGAAGAGGAGAGCAGGGTGAGCGAAGGGGGCTGGACTAAA GTGGAATATCGGAAGAAGACACACAGGCAACTTTCGGCCAAGACTAGCAAGGAGAGAACCCGTGGCAACT ACCGTGGGCGGCGGAATTTTTGAGGGATTGGGTCAGATGCGCTTTTCCAAGCGGGTTAGTAGTGCTTTGT GCAATGGATTTTTGGTAATAAGGTATCTTGAGGTTATAGGGACCAAAAAAAGACTAGTTCTGGGCTTGGG AAACACCTTTTAACTGAAAGGACAACCAAAGCAGGGCCTCAATTATGGCTGTTAGTCAGTCAACTAGAGG TGGCAATTAAACTTGACAATAACTGCCAATGTTTTGTCCCCTGAATTACTATTGAGGTGGGGAGGGCTAT GACATTGCCTGCTGGGAACATTCGAGCAGGCTTGGGGCCAGGATAAAGCTAGTGAGAACCACAGAAAAAT CATATTTCTGGACAAAACAGGATTCATCTTATCTTCTCTTTCATCTAAGTTCCAAGATGGCTCTGCAAAG CACTGTGGACGATTCTTGAGTTAAAATTTGTTTTTTGATTTTGGGGTTTTGTTTTTTTTTTTTTAACCTA CTGGGATAAAATATCATTTATCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5346593 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5346593 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7030 same embryo
	EMAGE:7035 same embryo
	EMAGE:7034 same embryo
	EMAGE:7031 same embryo
	EMAGE:7033 same embryo
	EurExpress:euxassay_002557 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source