EMAGE mouse gene expression spatial database

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EMAGE:7094

Ccni cyclin I ( MGI:1341077)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_004402_01	euxassay_004402_02	euxassay_004402_03	euxassay_004402_04	euxassay_004402_05

euxassay_004402_06	euxassay_004402_07	euxassay_004402_08	euxassay_004402_09	euxassay_004402_10

euxassay_004402_11	euxassay_004402_12	euxassay_004402_13	euxassay_004402_14	euxassay_004402_15

euxassay_004402_16	euxassay_004402_17	euxassay_004402_18	euxassay_004402_19	euxassay_004402_20

euxassay_004402_21	euxassay_004402_22	euxassay_004402_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7094_wholemount_strong.wlz

7094_wholemount_moderate.wlz

7094_wholemount_weak.wlz

7094_wholemount_possible.wlz

7094_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7094_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6409
Entity Detected:	Ccni, cyclin I ( MGI:1341077)
Sequence:	sense strand is shown >T6409 GCGCGCCGAGGATCATGAGGTGGTAACGGGCCCCCGGATGACCCCGCGTCACCACTGTGAGGCCTACAGC TCTGCCGGGGAGGAGGAGGAGGAGGAAGAGGAGGAGAAGAAGAAGGTAGCTACATCAAGCTGGGTGGCAG GCAGATCCAAAGGGATACCATGAAGTTTCCAGGACCTTTGGAAAACCAGAGATTGTCTTCTCTGTTGGAA AGGGCAATCTCCAGGGAAGCCCAGATGTGGAAGGTGAATGTGCCGAAAATACCTACAAATCAGAATGTTT CTCCATCCCAGAGAGATGAAGTAATTCAATGGTTGGCCAAACTCAAATACCAGTTCAACCTCTATCCAGA AACATTTGCTCTGGCAAGCAGTCTTTTGGATAGGTTTTTAGCTACAGTAAAAGCCCATCCAAAATATTTG AATTGTATTGCAATCAGCTGTTTTTTTCTGGCTGCTAAGACTGTTGAGGAAGATGAGAAAATTCCAGTGC TAAAGGTATTGGCAAGAGACAGTTTCTGTGGATGTTCCTCATCTGAGATTTTGAGAATGGAGAGAATTAT TCTGGATAAATTGAATTGGGATCTTCACACGGCTACACCATTGGATTTTCTTCACATTTTCCATGCCATT GCGGTGTCAACTAGGCCTCAGTTACTTTTCAGTTTGCCCAAATTGAGCCCATCTCAACATTTGGCAGTCC TGACCAAGCAGCTGCTTCACTGTATGGCCTGCAACCAACTTCTGCAGTTCAAAGGGTCCATGCTTGCTCT GGCCATGGTTAGTCTGGAAATGGAGAAACTCATTCCTGATTGGCTTCCTCTTACGATTGAACTGCTTCAG AAAGCACAGATGGACAGCTCCCAGTTGATCCACTGTCGGGAGCTGGTGGCATATCACCTTTCTGCTCTGC AGTCTGCCCTGCCTCTAAATTCCGTTTATGTCTACCGTCCCCTCAAGCACACCCTGGTAACCTGTGACAA AGGAGCATTCAAATTACATCCCTCCTCTGTCTCAGGCCCAGATTTCTCCAAGGACAACAGCAAGCCAGAA GTGCCAGTCCGAGGTCCAGCAGCCTTCCACCTGCATCTCCCCGCTGCCAGTGGGTGCAAGCAAACCTCTG CTAAACGGAAAGTGGAGGAGATGGAGGTGGATGACTTCTACGATGGGATCAAGCGGCTCTATAATGAGGA CAATGGTCCTGAGAATGTGGGTTCTGTATGTGGCACTGATTTATCAAGGCAAGAGGGCCATGCTTCCCCC TGTCCACCTTTGCAGCCTGTTTCTGTCATGTAGTTTCAGGTGTCAGCTTCCAGTGCACACGAAGGCTGAC TACTCGGGGTGAGACTAGAAACCCAGGGAAGGCTGTGGAGAAGGCATGTGCTTTATCAGACTGACTGAAG TGAGCCAGGAAAAAAAGAAAACCACTCTTAATCTTTCGTGCGGTTACTTACAATCCAACGTAATTTAATA TAAAGGCTATATTTGTAGACTCAAGATCCAAAATATATTTAAAAGTAAAGCAAAAGTTCTTTGTACTATG TCAGTTCCACCATTGTTAAATAAGTTTGCCCCATGTCAAAAAAAAATGTTTAGCGGAAAGTTGCAAACTC TCAGCTAGGAACCTTGTTCCAGTGTCCTTATTTTCCTCTTGCCTTTTCTTGCCTCGGTTGAATACTTAAC TAAGCTGTGTGCTTGTTGATCTATGTATTCTGACTTCACTTGAGTACCACCCACCTTTTCTTTTAAAGTA ATTCAGTAAGTAAATTATTTTTGTGTGGCAGCCATGTTTAATCCACAGTTCAAGTATGTTAGTTTGAAAA GGGCACTTTGAAGCTATCCCCATGAATCAGTGGCAGTAGGAAAAGTTCTCTTTTTTTGTGTCTCATTTCA GTTTTTAGTTTAAAATTATTATTGTCCTTTTTTTGTTTATCTTGAAGCTCAATAAAATGGCACGTAATTA GGACATTTTAAGCATTTTTGACATTTATATAAAAGAATTTCTGATAAGGTTAATATATCCAGGTGCTCAC CAAAGAAACATGTATGTAATATACACGTAGATTTTTGTAACTGATCTGTTCTTGCTCATTTATAATCCGT AGAAGCAACTGTCTAGATACTGGGGCAGCCCTGATTTGAGTCTGTAACTTATAATTTAATTCATTACCCT AGTTTCATATTATGCCATTAGGATTTTCTTGATAAGGAATTATTCCCTTGTTTCTCTCTGAGCAATGTCT GGACCCTGAGCTCCCTTTGCAGTCTGAAGGCACTGCAGTCAGAACCATGTACTGCTGATAAAGCCTCTGG TAGCAATAAAATGTTGTCCTTAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3583418 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3583418 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7098 same embryo
	EMAGE:7096 same embryo
	EMAGE:7097 same embryo
	EMAGE:7095 same embryo
	EMAGE:7099 same embryo
	EurExpress:euxassay_004402 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source