EMAGE mouse gene expression spatial database

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EMAGE:7095

Hnrnpk heterogeneous nuclear ribonucleoprotein K ( MGI:99894)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


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euxassay_004407_11	euxassay_004407_12	euxassay_004407_13	euxassay_004407_14	euxassay_004407_15

euxassay_004407_16	euxassay_004407_17	euxassay_004407_18	euxassay_004407_19	euxassay_004407_20

euxassay_004407_21	euxassay_004407_22	euxassay_004407_23	euxassay_004407_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7095_wholemount_strong.wlz

7095_wholemount_moderate.wlz

7095_wholemount_weak.wlz

7095_wholemount_possible.wlz

7095_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7095_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6408
Entity Detected:	Hnrnpk, heterogeneous nuclear ribonucleoprotein K ( MGI:99894)
Sequence:	sense strand is shown >T6408 CGCGACAGCGCTGCAGACGCCATTATCCTCTGCTTCTCCGCTGCACGGACGTCGCCGTCGTGCTCGTCTC CCACTCGATTGCGGCCTATTGGTGGATCCATTTAATTCAAGAAAATGGAGACCGAACAGCCAGAAGAAAC CTTCCCCAACACCGAAACCAATGGTGAATTTGGTAAACGCCCTGCAGAAGATATGGAAGAGGAGCAAGCC TTTAAAAGATCTAGAAATACTGATGAGATGGTTGAATTGCGCATTTTGCTTCAGAGCAAGAATGCTGGAG CAGTGATTGGAAAAGGAGGCAAGAATATTAAGGCTCTCCGTACAGACTACAATGCCAGTGTTTCAGTCCC AGACAGCAGTGGCCCCGAGCGCATACTGAGTATCAGTGCTGATATTGAGACGATTGGAGAAATTCTGAAG AAAATCATCCCTACCTTGGAAGAGGGCCTGCAGTTGCCATCACCCACTGCAACCAGCCAGCTCCCGCTCG AATCTGATGCTGTGGAATGCTTAAATTACCAACATTATAAAGGAAGTGACTTTGATTGCGAGTTGAGACT GTTGATTCATCAGAGTCTGGCAGGAGGAATAATTGGTGTTAAAGGTGCTAAAATCAAAGAACTTCGAGAA AACACTCAGACAACAATCAAGCTTTTCCAGGAGTGCTGCCCTCACTCTACTGACAGAGTTGTTCTTATTG GAGGAAAACCTGATAGGGTTGTAGAATGCATCAAGATCATCCTTGACCTTATATCTGAGTCTCCCATCAA AGGACGTGCACAACCTTATGATCCCAACTTTTATGATGAGACCTATGATTATGGTGGTTTTACAATGATG TTTGATGACCGCCGAGGACGACCTGTGGGATTCCCCATGAGGGGAAGAGGTGGTTTTGACAGAATGCCTC CTGGTCGGGGTGGGCGTCCCATGCCTCCTTCTAGAAGAGATTATGATGATATGAGCCCTCGTCGAGGACC TCCACCACCACCACCTGGTCGAGGTGGCCGGGGTGGCAGCAGAGCCCGGAATCTGCCTCTTCCTCCTCCA CCACCACCCAGAGGGGGAGATCTAATGGCTTATGACAGAAGAGGAAGGCCTGGAGACCGCTATGATGGCA TGGTTGGGTTCAGTGCTGATGAAACTTGGGATTCTGCAATTGACACATGGAGCCCATCAGAATGGCAAAT GGCTTATGAACCACAGGGTGGTTCTGGATATGACTATTCTTATGCAGGGGGCCGTGGCTCATATGGTGAT CTTGGCGGACCTATTATCACTACACAAGTAACTATTCCCAAAGATTTGGCTGGATCTATTATTGGCAAAG GTGGTCAGCGGATTAAACAAATTCGTCATGAATCTGGAGCATCAATCAAAATTGATGAACCTTTAGAAGG ATCTGAAGATCGGATCATTACCATTACAGGAACACAGGACCAGATACAGAACGCACAGTATTTGCTGCAG AACAGTGTGAAGCAGTATGCAGATGTTGAAGGATTCTAATGCAAGATATTTTTTCTTTTTTATAGTGTGA AGCAGTATTCTGGAAAGTTTTTCTAAGACTAGTGAAGAACTGAAGGAGTCCTGCATCTTTTTTTTTTTAT CTGCTTCTGTTTAAAAAGCCAACATTCCTCTGCTTCATAGGTGTTCTGCATTTGAGGTGTAGTGAAATCT TTGCTGTTCACCAGATGTAATGTTTTAGTTCCTTACAAACAGGGTTGGGGGGAGGGCATGCAAAAACTAA CATTGAAATTTTGAAACAGCAGCAGAGTGAGTGACTTTTATTTTTTGTTCATTGTTGGTGGTTTTAAAAA AAATTCCCCCCATGTAATTATTGTGAACACCTTACTTTGTGGTCACTGTAACATTGGGGGGTGGGACAGG GAGGAAAGTAATAGTCCACATGTCCCTGGCATTTGTTCAGAGCAGTGTGCAGAATGTAATGCTCTTTTGT AAGAAACGTTTTATGATTTTTAAAATAAATTTAGTGAATCTAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3583037 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3583037 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7098 same embryo
	EMAGE:7096 same embryo
	EMAGE:7097 same embryo
	EMAGE:7094 same embryo
	EMAGE:7099 same embryo
	EurExpress:euxassay_004407 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source