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EMAGE:7127

Btbd9 BTB (POZ) domain containing 9 ( MGI:1916625)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7127 EMAGE:7127 EMAGE:7127 EMAGE:7127 EMAGE:7127
euxassay_002651_01 euxassay_002651_02 euxassay_002651_03 euxassay_002651_04 euxassay_002651_05
EMAGE:7127 EMAGE:7127 EMAGE:7127 EMAGE:7127 EMAGE:7127
euxassay_002651_06 euxassay_002651_07 euxassay_002651_08 euxassay_002651_09 euxassay_002651_10
EMAGE:7127 EMAGE:7127 EMAGE:7127 EMAGE:7127 EMAGE:7127
euxassay_002651_11 euxassay_002651_12 euxassay_002651_13 euxassay_002651_14 euxassay_002651_15
EMAGE:7127 EMAGE:7127 EMAGE:7127 EMAGE:7127 EMAGE:7127
euxassay_002651_16 euxassay_002651_17 euxassay_002651_18 euxassay_002651_19 euxassay_002651_20
EMAGE:7127 EMAGE:7127 EMAGE:7127
euxassay_002651_21 euxassay_002651_22 euxassay_002651_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7127Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7127_wholemount_strong.wlz
7127_wholemount_moderate.wlz
7127_wholemount_weak.wlz
7127_wholemount_possible.wlz
7127_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7127_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T3364
Entity Detected:Btbd9, BTB (POZ) domain containing 9 ( MGI:1916625)
Sequence:sense strand is shown

>T3364
AATTCGGACGAGGTGTTCCAANGATCGCAGATTGTGCCAGTGTGATTGAAGGAGTCAGTCGGAGCCGGAA
TGCCTTGCTGAATGGGGACACTAAGAATTATGACTGGGACTCTGGCTACACGTGCCACCAGCTGGGCAGT
GGTGCCATTGTGGTTCAGCTGGCACAGCCATACATAATTGGCTCAATACGGTTATTACTCTGNGACTGCG
ATGATCGAAGCTACAGCTACTATGTTGAGGTTTCCACCAATCAGCAGCAGTGGACCATGGTGGCCGACAG
AACGAAAGTGTCCTGCAAGTCCTGGCAGTCAGTCACTTTTGAAAGACAGCCTGCATCCTTCATCCGAATC
GTCGGGACACNCAACACNGCAAATGAGGTGTTCCACTGTGTCCACTTTGAGTGTCCGGAGCAGCAGAGCA
ACCAGAAGGAGGACAGCAGTGAGGAGCCAGGGACAGGGGACCCCAGNACCCCCAATNAGCAGCTCGACCC
TCATGCACCACGGGCACCCAGCGCCAGCTCACTACCACCGAGTCCAGGTCCTAACTCACG
Notes:The probe template was PCR amplified from IMAGE:2936800 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2936800 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7132 same embryo
 EMAGE:7131 same embryo
 EMAGE:7128 same embryo
 EMAGE:7130 same embryo
 EMAGE:7129 same embryo
 EurExpress:euxassay_002651 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS