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EMAGE:7313

Spin1 spindlin 1 ( MGI:109242)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7313 EMAGE:7313 EMAGE:7313 EMAGE:7313 EMAGE:7313
"Pseudo-wholemount" of euxassay_004538. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004538_01 euxassay_004538_02 euxassay_004538_03 euxassay_004538_04
EMAGE:7313 EMAGE:7313 EMAGE:7313 EMAGE:7313 EMAGE:7313
euxassay_004538_05 euxassay_004538_06 euxassay_004538_07 euxassay_004538_08 euxassay_004538_09
EMAGE:7313 EMAGE:7313 EMAGE:7313 EMAGE:7313 EMAGE:7313
euxassay_004538_10 euxassay_004538_11 euxassay_004538_12 euxassay_004538_13 euxassay_004538_14
EMAGE:7313 EMAGE:7313 EMAGE:7313 EMAGE:7313 EMAGE:7313
euxassay_004538_15 euxassay_004538_16 euxassay_004538_17 euxassay_004538_18 euxassay_004538_19
EMAGE:7313 EMAGE:7313 EMAGE:7313 EMAGE:7313 EMAGE:7313
euxassay_004538_20 euxassay_004538_21 euxassay_004538_22 euxassay_004538_23 euxassay_004538_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7313Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7313_wholemount_strong.wlz
7313_wholemount_moderate.wlz
7313_wholemount_weak.wlz
7313_wholemount_possible.wlz
7313_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7313_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5779
Entity Detected:Spin1, spindlin 1 ( MGI:109242)
Sequence:sense strand is shown

>T5779
CGGACGCGTGGGGGGAGGCGCCGTCTGGCTCGGGCTGGGCCGGCGGGGAGCACGAGCGAACCACGGCGGC
CCCGTGGGCAGCCTCGGTGGCCGACAGAGTGCTTGGGATCCCGTGTGTTTTTGCTGAACTTGTAAAGGAG
ACATCTGGATGGTGGATTAACACGAACCTGTGGGCAGCCTCATAGCTGAGAACATTGGATTTTCACCCTA
GTCCAGCAGCTCTGCTGCTCACATAGATACAGATGAATGAAGACCCCATTCGGGAAGACACCTGGCCAAC
GGTCCAGAGCTGATGCAGGCCATGCTGGAGTATCTGCAAACATGATGAAGAAGAGGACATCTCACAAAAA
ACATCGGACCAGTGTGGGACCAAGCAAGCCTGTGTCCCAACCCCGGCGGAACATCGTAGGCTGCAGGATC
CAGCATGGATGGAGAGAGGGCAATGGCCCTGTTACCCAGTGGAAGGGGACTGTCCTGGACCAGGTGCCTG
TGAATCCTTCCCTGTATCTTATAAAGTACGATGGATTTGACTGTGTTTATGGACTAGAACTTAATAAGGA
TGAAAGAGTTTCTGCACTGGAAGTCCTCCCTGATAGAGTTGCAACATCTCGGATCAGCGATGCACACTTA
GCGGACACAATGATCGGCAAAGCAGTGGAGCACATGTTTGAGACAGAGGACGGCTCTAAAGATGAGTGGA
GGGGGATGGTCTTGGCACGGGCGCCTGTCATGAACACATGGTTTTACATCACCTATGAGAAAGACCCTGT
CTTGTACATGTACCAGCTCCTCGATGACTACAAAGAAGGCGACCTCCGCATCATGCCTGATTCCAATGAT
TCGCCTCCAGCAGAAAGGGAGCCAGGAGAAGTTGTGGACAGCCTGGTAGGCAAGCAAGTGGAATATGCCA
AAGAAGACGGCTCGAAAAGGACTGGCATGGTCATCCACCAAGTAGAGGCCAAGCCCTCTGTCTATTTCAT
CAAGTTTGATGACGATTTCCATATTTACGTCTACGATTTGGTGAAAACATCCTAGATGTCATCACAAACT
TTGCCAAATTTGTGGAACTATTAAATGTATAATTTGTAGAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:2654233 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:2654233 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7312 same embryo
 EMAGE:7310 same embryo
 EMAGE:7311 same embryo
 EurExpress:euxassay_004538 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS