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EMAGE:7414

D9Ertd402e DNA segment, Chr 9, ERATO Doi 402, expressed ( MGI:1196217)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7414
euxassay_005216_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7414Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7414_wholemount_moderate.wlz
7414_wholemount_weak.wlz
7414_wholemount_possible.wlz
7414_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7414_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7639
Entity Detected:D9Ertd402e, DNA segment, Chr 9, ERATO Doi 402, expressed ( MGI:1196217)
Sequence:sense strand is shown

>T7639
AAGAGGTAATCCGCCAATCATCTTTCTCCCTCAGACCTAGTCGGCCGGAAGAACCGGCTTGTGTCTCCCG
AAGCTGCCTTCGGAAACCCGCAGATAGCGGGGCAATTAATGGATGCTTGGAAGTTGGCGTGCTTATTCGG
AAATGTTTTGCCACTTGAGGCCTTTGAGGAGGTTCGGCCTGAGGAAGGTCCTCCCTCATTGGCTTCACTA
CTCTCGAGCTTTATCAGGGGCAGAAGCCATCAACGCCTTGAGGCCTTTCTACTTTGCAGTGCATCCTGAT
TTCTTTGGACAGCACCCCAGGGAAAGGGAAGTCAATGAAAATTCTCTTAAGAGATTAAGTGTCTATTTAG
AAAATCTCCAGAAACCAGGCTTCAAATCTCTGAAACCAACTCAGCTTACATTTTATATAAGAGAAAAAAC
AGCCCAGAATTCCTCTGAAGGCCAGGAGCCTATCAGTACTACCGGATTCCGAGCAGTCAGATTTACTTTG
CACAGCAGCGATCTGCTAAGCACAGTATTGTATATTCTCAACTCCTGCAGTTTGCCTGTTGAACACGTCC
AAAGCTTGAACACTAATGTGCATTCCCAGCCTCTCAAGGAAGCTACAGGGATGCCTGACAGACCCATCAA
ATGGCATAGGTCCTATTATTCCTTTACTGGGTTCAAGGACCCTGATGAAGACCTCACACACGTCTCAAGA
GTGGAAACAACCCTAACGTCCTGGTTAGGTAGCAATGGGAAAGGTGCCGTGAAGAAGCTGAGGAACAGTC
TGCCACTTCGGAAGGAGCTGGATCGCCTGAAGAATGAGCTGTCTGAGCTTCTGCAGCTTTCAGACATCAG
GTGGCAGAGAGGCTGGGGAGTTGCCCATCGCTGCAGCCAGCTGCACAGTCTCAGCCGCCTAGCACAGCAG
AATCCGGGGCCACTTCAGAATGTGAAAGGATGCACGGTTGTATTCACAGACCGCTCCGGTATGAGTGCAC
TGGGCCATGTGATGCTGGGAACCATGGATGTCCACCACCACTGGACAAGGCTTTTTGAAAGCTTGCCAAG
TTATTTTGACCTTCAGAGGAGAATGTCAGCCTTAGAAGCCCAAATAAGCAATCTTCTAGGGGGAATCCAA
GTGGTTTATATCGAAGAGTTGCAGCCAGCACTCACACTTGATCAGTACTACTCTCTCCTCCACACCTTCT
ACAACCAGCTGCTGAGAAGCAGGGTGCCGCCCCACCCCCACCCCCAGAGTCTGAGCGGCTTGCAGATGAT
CCTTAGCAGTGACAGGTATGCGCCAAGCTTGCATGAACTCGGGCATTTTGATATCCCAGCCCTCTCAGAT
CCAGCAAGCCTGCAGTCCTTCATGAGAACCAAAGCCCAGCAGGCGAGAGAAAACATGACTAGAAGGGAGA
AGTTAAAAGTTATGGAAAATGAATTGATACAGGCTTCAACAAAGCAGTTTTCTCTGGAGAAGTTGTATAA
AGAGCCCAGCATTTCTAGCAGACAGATGGTGGATTGCTGTAAGAGACTTCTTGAACAGTCGCTGCCATAT
CTGCATGGGATGCACCTCTGCGTCTCACATTTCTATTCTGTTATGCAAGATGGAGACCTGTGCATCCCGT
GGAACTGGAAGAAAGGAGAAGCCATGAAGTAACACAGATATCTGTTTTATTTTCTGAAGAAATGAAAAAC
TGTTGAATTTATTTAAATTCAGTTTGATATAACATTAGTATTTACATGTTAGAACAAAGTGTCTAACTGC
TGCTATAAAAGTGGGGAGGGTTTTCTTTTTAGTGATTTTATGCTAAGAAACTTGCTTTTAAAAGGTTTTA
TCCCCTAGACTTATGATGCTGATGGCTAGGCAAAAGATACTAGAAGAAAAAAAACTATTTTAAAGATATG
CAATAGAAGGTTCTGTAAGAGTCATATATTTTTATAGAATAAATGTGAGTAATGTAAGTTGGTCTCGCTC
AGTATAGCTCTTTAGGACTGGGACTCCATTTTTACATGCAACACAGTTTAATGTGCACCTTCATAGTTAC
ATCGTATACACACACACACTTTGTAGCCAGTAATAGACGGTTATTCAAGACAGATGACTGGCAAGTAGCA
AAAGTTAAATAACCAAATTAAAAGTTAAATAACCAAATTAAAAATTAAATAACCAAATTTTGCTTAAGAG
AAAGATTTTTTAAAACCCTATTGAATATATACTATTAACATTGTCTGATACAAGTTTACTAAAGCATCAG
TAACAGAGAACTTAAATACATGATTTCTTCTACCAATTAAAGTATCAGTGGAGCATATACTTGGTGGGCA
CAGGCATCCTCAAGATGAGTAAGATGTAGGATTATAACTTAGCCTGAAGCTCCTTAAAAAGCTTTCTTCA
CTTCTTCAGCTCTGGCCCAGGCAGAGCCCTGTGCTATGGCTCGCTCTCAGGTGAAGCATGGCCTCCTTTG
TGCTCAGCTGTCTCCTGCACAGTGAGAGGCCTGCTCTCTGTTCAGAGTAGACCCACAGTACATTAGAACA
AAGGAGATGCTAAAATCAGTTTTTCATGTTTTGGGTTTTTATGAAACATCATTAATTTAAACAGTTCAAA
TGTATGTTCAAAATAAGAAATGGCTTATAAAAGGATTGTGTGTGCCATTGTGGCTTTTGACCCATGCTAA
TGTGACAAATGTTGCTGTAAATACTCTTATGAAACAGTCCCTAAGTAGATTTGGTGGCACACATCTTTAA
TCCCAGCTCTTGGGAAGCAGAGGCAGGTGGATCTCTGTGAGTTTAAGGCCAGCCTGGTCTATAAAGTGAG
TTTCAGGACAACCGGGGATGTTAAACGCAGAGTAACCCTGTCTGGGGGGTGGGGCCGTCAAACCTGACAT
TTATTAGAAAATTGCTTGGATTGTACCGTGTCTAATATCAGCTAACGTGGAATCTGCTGTAATGTGTGTT
GTATTGGATTTGTCTCAGAACTAATTGTTACATAATAAAGCAAGCCTTGGCCACCACAAAAAAAAAAAAA
AA
Notes:The probe template was PCR amplified from IMAGE:30111134 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30111134 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7413 same embryo
 EMAGE:7416 same embryo
 EMAGE:7412 same embryo
 EMAGE:7417 same embryo
 EMAGE:7415 same embryo
 EurExpress:euxassay_005216 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS