Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:758

Hoxb1 homeobox B1 ( MGI:96182)
TS15
in situ hybridisation

Data Images
EMAGE:758 EMAGE:758
Fig 2B Zhang et al., 1994 [PMID:7956823] . Copyright: This image is from Development and is displayed with permission of The Company of Biologists Ltd. who owns the copyright. Fig 2A Zhang et al., 1994 [PMID:7956823] . Copyright: This image is from Development and is displayed with permission of The Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity: three stars
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
Abbreviations used: g, VII/VIII ganglion complex; r, rhombomere (4). Only the data from Image B has been spatially mapped in this EMAGE entry.
Expression Pattern Description
Spatial Annotation:
EMAGE:758EMAGE:758Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mapping3D context movie

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
758_voxel_strong_3D_1.wlz
758_voxel_moderate_3D_1.wlz
758_voxel_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:758_all_domains.zip
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
facio-acoustic vii-viii preganglion complex
detected detected
rhombomere 04
detected detected
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1096127
Entity Detected:Hoxb1, homeobox B1 ( MGI:96182)
Sequence:sense strand is shown

>MGI:1096127
CCAGGTTGCCCAAAGGAAGCCGCTGGAGATGCCTCTGACCAGTCCGCGTGCACCTCCCCAGAAGCCTCGC
CCAGTTCCATCACCTCTTGAATTGAACTTCCTAAGTAACTGGGCTTCCAACGCTTGACCAGTTCTCTCGA
AGACTTTCCCAAACTTCACAGCCTTGGTGACCCTCCTCAAGGCCGAGGCACCAGTTTAGAGCTGCCCAGG
AAACTGGGCAGGAGTTGGGAAATGTATTTTTCTCTCTCTCAGATCTAGGGGTGGAGGGATGATTGATGGC
TGGGGATCCTACAGGTCTTGGGACCTGGGGAACACTCAACTCATCAGAGGTCGAAGGAAGGCCTTTTGGC
TTTGATCTGGAGTCAGCCCATCCTTTCGGGCTTCTCCTTTCCCTTCCAACTCAGTTCAGTGCCTTTGAGC
TTAGAGAGTTCTTCTTTCGA
nt 1318 - nt 1757 of X53063.1
Notes:The probe used in this study by Zhang et al., 1994 [PMID:7956823] was a "PCR-cloned 450 bp fragment from total mouse genomic DNA, representing nucleotides 901-1350 of the Hoxb-1 gene (Frohman et al., 1990 [PMID:1983472] )". X53063 submitted to GenBank by Frohman et al in conjunction with their paper.
Chemistry:RNA
Strand:antisense
Label:S35
Specimen
Organism:mouse
Strain:C57BL/6 x CBA
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:section
Procedures
Embedding:paraffin
Staining procedure:autoradiography
General Information
Authors:Zhang et al., 1994 [PMID:7956823] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:7956823] Zhang M, Kim HJ, Marshall H, Gendron-Maguire M, Lucas DA, Baron A, Gudas LJ, Gridley T, Krumlauf R, Grippo JF 1994 Ectopic Hoxa-1 induces rhombomere transformation in mouse hindbrain. Development (120):2431-42
 [ PMID:1983472] Frohman MA, Boyle M, Martin GR 1990 Isolation of the mouse Hox-2.9 gene; analysis of embryonic expression suggests that positional information along the anterior-posterior axis is specified by mesoderm. Development (110):589-607
Links:MGI:1345125 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI