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EMAGE:759

Hoxa1 homeobox A1 ( MGI:96170)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:759 EMAGE:759
Figure 1D of Zhang et al., 1994 [PMID:7956823] . Copyright: This image is from Development and is displayed with permission of The Company of Biologists Ltd. who owns the copyright. Figure 1E of Zhang et al., 1994 [PMID:7956823] . Copyright: This image is from Development and is displayed with permission of The Company of Biologists Ltd.

Expression pattern clarity: three stars
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
Abbreviations used: ov, otic vesicle; fg, foregut.
Expression Pattern Description
Spatial Annotation:
EMAGE:759EMAGE:759Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mapping3D context movie

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
759_voxel_strong_3D_1.wlz
759_voxel_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:759_all_domains.zip
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
foregut
detected detected
regionalExpression is found in foregut epithelium.
embryo ectoderm
detected detected
regionalExpression is found in posterior neuroectoderm.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1345110
Entity Detected:Hoxa1, homeobox A1 ( MGI:96170)
Sequence:sense strand is shown

>MGI:1345110
GAATTCTGGAGCCTTGGTTGGAAGTTAACTCCTTCATCCACATCGGGTGTCCACATCAATTGCTGATGGC
TCCCAACATCCTTTCCTTCACTGTTGTGAGATTTTTTTCTCCCCACAACCTATGATTCCTTTTAGATGTC
GGCTGGAGAACAGTTAGTTCCCTTTGCCATCAGACATTTGCAGGAAGGAGGCATCTCTCCTTTTATCTAT
GTATTGTTCTTCTCCACCTAGCCCTTAAGTAGGACATAGAGGAGAGAGAGTGTCCAAAGACTCATGAAGA
AGAGATGCACTGTGTTTACACAATTAATTCACCCCCTAACTTAGCTGGTTTCATGTGTGTGAGTTTGCTG
GTTGTAAATGCTTTCCCGTCAGAGATTTATCTTTATACACATTTTATAGAAATATGTAGGTCACTAAATC
AAACAGGGTGGACAAATTCTCAAAACTGGTACAGTTCATGTGTGATTATGGGCGAAAGAAGAAAACCTCT
TTCATTCAAACAGAGTCAGATGCCTCAGAAGTTGGCCTCAATTGGTTCTTTCAGAGTTAAGAAGGCCTGC
GAAGCACTTTGCCTGTGCCAGGTCTTCCCAAACTCTAACCAATTCTTCCTGCTTCTCTGGCCACCGTGCA
TTTAAAAATCATGCTGGATCATTTGTAACCCAAAGGTATTCATTCTTTCAGTCACCCTTTCCTTCCACAC
TGTCTTGTATCATGGCTG
nt 1233 - nt 1950 of NM_010449.1
Notes:The probe used in this study by Zhang et al., 1994 [PMID:7956823] was "a 700 bp EcoRI-BamHI fragment from the Hoxa-1 cDNA".
Chemistry:RNA
Strand:antisense
Label:S35
Specimen
Organism:mouse
Strain:C57BL/6 x CBA
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:section
Procedures
Embedding:paraffin
Staining procedure:autoradiography
General Information
Authors:Zhang et al., 1994 [PMID:7956823] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:7956823] Zhang M, Kim HJ, Marshall H, Gendron-Maguire M, Lucas DA, Baron A, Gudas LJ, Gridley T, Krumlauf R, Grippo JF 1994 Ectopic Hoxa-1 induces rhombomere transformation in mouse hindbrain. Development (120):2431-42
Links:MGI:1345124 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI