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EMAGE:7597

Pex1 peroxisomal biogenesis factor 1 ( MGI:1918632)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7597
euxassay_004698_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7597Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7597_wholemount_strong.wlz
7597_wholemount_moderate.wlz
7597_wholemount_weak.wlz
7597_wholemount_possible.wlz
7597_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7597_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8667
Entity Detected:Pex1, peroxisomal biogenesis factor 1 ( MGI:1918632)
Sequence:sense strand is shown

>T8667
CTGGATGCCATCTTGCCGGCTCTAGTCCCCCGCGCCAGAACAACATCCGCCAGCCGCGCTCCTCTGAGTC
CAATAAGAGAGCAGGATGGACCAGGCGTGCTAGGATTGGCTGAAGGATCGACCCCATCGACGATCATCTC
CTGAGAGCGAGAATTCGACGAGCGACGTGCCGCCCCCTAGAGCTTCGGAGGTGGCCCGAGGGTGACAGCG
GCCGGGCGTGGGAAGAGGGGGGCGGGCCTGATCGATGTTCTCGGGTTCCGACGCTCTCACCTGACGAGAA
GCCGGTGGACTCCGCTCTCCGGTGAGAGTTGAACCTTGGGACAATGTGGAGCAGCGATCGCTTAGCGGGT
GCGGGGTCTGGTGGGGCGGTCGTGACGGTGGCCTTCACGAATGCTCGGGACTGCTTCCTGCATCTGCCGC
GGCGCCTCGTGGCCCAGCTTCACCTGCTGCAGAATCAAGCTATAGAAGTGGCCAGCGATCACCAGCCTAC
CTACCTGAGCTGGGTGGAAGGCAGGCATTTTAATGATCAAAGTGAAAATGTGGCAGAAATTAATAGACAA
GTTGGCCAGAAACTTGGACTCTCAAGCGGAGATCAGGTGTTTCTCAGGCCTTGTTCCCATGTGGTATCTT
GCCAACAGGTTGAAGTGGAGCCTCTCTCAGCAGATGACTGGGAAATACTGGAGCTGCACGCCATTTCCCT
TGAACAGCATCTTCTGGATCAGATTCGAATAGTTTTCCCCAAAGCTGTTGTTCCCATCTGGGTTGACCAG
CAGACCTACATATTTATCCAGATCGTCACTCTGATGCCAGCTGCCCCTTATGGAAGGCTAGAAACTAACA
CCAAACTCCTTATTCAGCCAAAGACACGCCAAGCCAAAGAGAGCACATTTCCAAAAGAAGGAGATGCACA
CGGACAAGTTCATAGTTATGGGCGAGAACAGAAAGGATTGTCAAAGGAATTACAAACCAGGCAGCTTCAT
ACGAACTCAGAGGGTATCACTGCATCCAATGGAAGAGACCCAAAAGTCCCAGGTGGCCCGTTGAAGCCAA
GCTGGTGGGCTGTGCTCGGAAGCATGCTTTCCTTTGGGCCTGACAGTAAACAGGAGTCAGCCTGGGGCTC
GTTGGAACTCGGTGCTTTCAAAAACATGCAGTCACAGGCTGCCCCTCTGGAAGGTACTTTCAGAGTATGC
CAAGTCCAGCCACCTAGTGCGCGTACCACCACCGCTACCTCTGTGTTTCACAAACACTGCACCGCCCACG
TATTTCCTTGGGACCAAGAATACTTTGATGTGGAGCCCAGCTTTACTGTGACCTATGGAAAACTAGTTAA
GCTACATTCTCCAAAACAACAGCAAGACAAAAGTAAGCAGGGTGTCCTGTTGCCTGACAAAGAGAAGCAG
CTGTCCAAGTCTCCAGATCATAAGCAGATCAGCTCCAACCGCAGTGAGGAGGCTGCTGAGGCCTGTGTGC
TGAAGGTAGTCTGGAATGGACTCGAGGAGTTGAAGAATGCCACAGAGTTCACCGAAAGTCTAGAGCTTCT
CCACCGTGGGAAAGTCTGGCCTAAAGACGTCAATGAAGAAACTATAAAAACAGTGTTCTCATCTTGGGTA
CAGCAGTCCGCTACCACGATGCTTCCTTTGGTAATATCAAAGGAAGAGCGTATTAAGCTGGAAATTAAAG
ATGGGCTGAGAGAGTTCTCTCTGAGTACAGTTCATTCTCAGGAAAAAGAAAAGGAAGAAGGAAAAACTGT
GTTTGTGTTGAGTTCCATCCTGCTGCAGAAGATCTCAGTACAAGTCCTTCTAGAGCCCATGATAAAAGAA
GAACAGAGTGCGGAAATCGACTTTCTTCTTCCCTCTTTAACGCTGAGCTCTTTGGGGGGAGTGAGTGCCT
TAGGTGCATCTGCAATGGAGCACATCACTCACAGTCTCCTGGGACGCCCGTTGTCTAGGCAGCTGATGGC
CCTCGTTGCAGGACTTAGGAATGGCGCTCTTTTGATCACTGGAGGAAAGGGAAGCGGGAAGTCAACATTC
GCGAAAGCCATCTGCAAGGAAGCACAGGACACTCTGGATGCCCGTGTGGAGACAGTCGACTGCAAGGCTT
TACGAGGAAAAAGGCTTGAAAGCATACAAAAAGCGCTAGAGGTGGCTTTCTCAGAGGCCGCCTGGAGGCA
GCCATCTGTCATTCTGCTGGATGACCTGGACCTCATTGCCGGACTGCCAAGTGTCCCCGAGCAGGAGCAC
AGCCCTGAAGCGGTGCAGAGCCAGCGGCTTGCACATGCTTTGAACGATATGATCAAAGAGTTTGTTTCCA
CGGGAAGCTTGGTGGCACTCATCGCCACGAGCCAGCTCCAGCAGTCTCTGCACCCTTCCCTTGTGTCTGC
TCAAGGAATCCACACGTTTCAATGTGTCCAGCACCTTCAGCCTCCCAATCCGGAACAGAGATGTGAAATT
CTGCACAGTGTTGTGAAGAATAAACTGGGCTGTGATATAAGCAATTTCCCTGACTTGGACCTGCAGTGCA
TAGCTAAAGACACAGAAGCGTTTGTGGCTCGTGACTTTACAGTTCTTGTGGACCGAGCCATACACTCTTC
TCTCTCTCGCCAGCATAGCTCCTCTAGGGAAGACTTGACTTTAACAACATCAGACTTCCAAAAGGCTCTC
CGTGGATTCCTTCCTGCTTCTCTGCGAAATGTCAACTTGCATAAACCTAGAGACCTGGGCTGGGACAAGA
TTGGTGGATTACATGAAGTTCGGCAGATCCTCATGGATACTATCCAGTTACCAGCCAAGTACCCAGAATT
ATTTGCAAACTTACCCATACGACAGAGGACAGGAATACTGCTTTATGGTCCTCCAGGGACAGGAAAAACT
TTACTTGCTGGGGTAGTTGCAAGAGAGAGTGGAATGAATTTTATTAGTATTAAGGGACCAGAGTTACTCA
GCAAATATATTGGCGCAAGTGAGCAAGCTGTTCGAGATGTTTTCATCAGAGCACAGGCTGCAAAGCCCTG
CATTCTTTTCTTTGATGAGTTTGAGTCCATCGCTCCTCGAAGAGGCCATGACAACACAGGGGTTACAGAC
CGAGTAGTCAACCAGTTGCTGACACAGTTAGACGGAGTAGAAGGCTTACAGGGAGTTTATGTGCTGGCTG
CTACTAGTCGCCCTGACTTGATCGACCCTGCCCTGTTGCGGCCTGGCAGACTGGATAAATGTGTATACTG
CCCTCCTCCAGATCAGGTGTCCCGTCTTGAGATTTTAACTGTCCTCAGCAAGTCTCTAGCTCTGGCAGAT
GACGTGGACCTTCAGCACGTGGCGTCGGTCACCGACTCGTTCACTGGAGCGGATCTGAAAGCTCTGCTGT
ACAACGCTCAGCTGGAGGCCTTGCAGGGACGGCTGCTGCCCAGTGGGCTTCCCGATGGAGGCTCCAGCTC
TGACAGTGACCTGAGTCTGTCTTCAATGGTCTTTCTTAACCACAGCAGTGGTTCCGACGACTCCGCTGGA
GATGGAGAATGTGGCTTAGAGCAATCCCTGCTTTCTCTCGAGATGTCTGAGATCCTTCCAGACGAATCAA
AATTCAATATGTACCGGCTCTACTTTGGAAGCTCGTATGAATCGGAGCTTGGAAATGGGACCCCTTCTGA
CTTGAGCTCACACTGTCTGTCTGCACCAAGCTCCGTGACTCAGGATTTACCTGCAGCTCCTGGGAAAGAC
CCGTTATTTACACAACATCCTGTGTTCAGGACACCTTCCCAAGAAGGCTGCCAAGACCTCACCCAGGAGC
AGAGAGATCAGCTGAGGGCAGAGATCAGCATCATCAAAGGCAGATACCGGAGCCAAAGTGGAGAGGATGA
ATCCCTTAACCAGCCTGGACCAATCAAAACCACTTTTGCTATTAGCCAGGCACATTTAATGACTGCACTT
GCCCACACAAGACCGTCTATTAGTGAAGATGAAGGGAAGGAATTTGCTGAGCTGTATGAGAACTTTCAAA
ATCCAAAGAAGAGAAAAAATCAAAGTGGAACAGTGTTTCGAACTGGACAGAAAGTAACTTTAGCATAAAA
TACACTTCTGATTTTCTAGATGTGTTTGTTTTAATGGTCTGTCCCTAAGTTGTAACTATAAAAATGATGT
AAAAATTTTTTAATTTAATAAATTTGGTTAATCTATAAAATCACAGACTGGAAAGTGCTGTGATTCTGCT
CAGGACTACCTGAGATTAACAGTGCAGGCTAAAGGAAGTGATTTGTAACAGATCGTTTATTTTATTCCCA
AGTCTGTATTAAATCCTTAATGATATTACGTCAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6400629 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6400629 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7598 same embryo
 EMAGE:7599 same embryo
 EMAGE:7600 same embryo
 EMAGE:7595 same embryo
 EMAGE:7596 same embryo
 EurExpress:euxassay_004698 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS