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EMAGE:769

Otx1 orthodenticle homolog 1 (Drosophila) ( MGI:97450)
TS16 (9.75 dpc)
in situ hybridisation

Data Images
EMAGE:769
Fig 6A Acampora et al, 1999 [PMID:10068635] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd who owns the copyright.

Expression pattern clarity: three stars
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
This is defined by the authors as a frontal section. Image annotations: Arrow points to the boundary region between Otx1 and Otx2 expression domains. bn, basal neuroepithlium; Di, diencephalon; dn, dorsal neuroepithelium; Tel, telencephalon. For an adjacent section from the same embryo stained with Otx2, see EMAGE:803.
Expression Pattern Description
Spatial Annotation:
EMAGE:769EMAGE:769Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mapping3D context movie

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
769_voxel_strong_3D_1.wlz
769_voxel_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:769_all_domains.zip
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
telencephalon
detected detected
regionalExpression was observed throughout the presumptive dorsal telencephalic neuroepithelium
diencephalon
detected detected
regional
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1331374
Entity Detected:Otx1, orthodenticle homolog 1 (Drosophila) ( MGI:97450)
Sequence:sense strand is shown

>MGI:1331374
CGGGTTCAGAGAGCAGCGGCCAGTTCACGCCGCCCGCCGTATCTAGCTCTGCTTCTTCGTCTAGCTCAGC
GTCCAGTGCCTCCGCCAACCCCGCGGCTGCTGCGGCCGCGGGCCTGGGTGGGAACCCAGTGGCAGCAGCG
TCCTCTCTGAGCACGCCTACTGCTTCGTCCATCTGGAGCCCGGCCTCCATCTCGCCGGGCTCAGCGCCGA
CATCCGTATCGGTGCCAGAGCCACTGGCCGCTCCGAGCAACGCCTCGTGCATGCAGCGCTCGGTAGCCGC
AGGTGCGGCCACTGCCGCAGCCTCCTACCCTATGTCCTATGGCCAGGGCGGAAGCTATGGTCAGGGATAC
CCCGCGCCCTCCTCTTCTTACTTTGGCGGTGTAGACTGCA
nt 356 - nt 745 of NM_011023.1
Notes:The Otx1 probe used in this study by Acampora et al, 1999 [PMID:10068635] is indicated as being described by Simeone et al., 1993 [PMID:8101484] ie. as "a 396 nucleotide SacI-PstI fragment" - see also Fig 1a of Simeone et al. for diagram. This probe covers a part of the coding region that is 3' to the homeodomain coding region.
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:9.75 dpc
Theiler Stage:TS16
Mutations:none (wild-type)
Preparation:section
Procedures
General Information
Authors:Acampora et al, 1999 [PMID:10068635] Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:10068635] Acampora D, Avantaggiato V, Tuorto F, Barone P, Perera M, Choo D, Wu D, Corte G, Simeone A 1999 Differential transcriptional control as the major molecular event in generating Otx1-/- and Otx2-/- divergent phenotypes. Development (126):1417-26
 [ PMID:8101484] Simeone A, Acampora D, Mallamaci A, Stornaiuolo A, D'Apice MR, Nigro V, Boncinelli E 1993 A vertebrate gene related to orthodenticle contains a homeodomain of the bicoid class and demarcates anterior neuroectoderm in the gastrulating mouse embryo. EMBO J (12):2735-47
Links:MGI:1331415 same experiment
 EMAGE:803 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI