EMAGE mouse gene expression spatial database

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EMAGE:7753

Ddx17 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 ( MGI:1914290)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_007495. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_007495_01	euxassay_007495_02	euxassay_007495_03	euxassay_007495_04

euxassay_007495_05	euxassay_007495_06	euxassay_007495_07	euxassay_007495_08	euxassay_007495_09

euxassay_007495_10	euxassay_007495_11	euxassay_007495_12	euxassay_007495_13	euxassay_007495_14

euxassay_007495_15	euxassay_007495_16	euxassay_007495_17	euxassay_007495_18	euxassay_007495_19

euxassay_007495_20	euxassay_007495_21	euxassay_007495_22	euxassay_007495_23	euxassay_007495_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7753_wholemount_strong.wlz

7753_wholemount_moderate.wlz

7753_wholemount_weak.wlz

7753_wholemount_possible.wlz

7753_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7753_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9058
Entity Detected:	Ddx17, DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 ( MGI:1914290)
Sequence:	sense strand is shown >T9058 GTTGCTGGGAAGGAAGGGAGACGCCTCAACCGTGGCACCGCCCGGTTTGAGCGGGACCAGACCTCCCGAC TGTCCTAACAACCCCGATTCTCTGAGTTGTGCTCCCGTCTCCGACGAGAGAGGCGGCGACGGTGGCGTCT GCGACGGGAGACAGCGCGTCGGAGCGAGACAGCGCCGCGCCTGCCGCCGCCCCAACAGCGGAGGCGCCGC CGCCGCCATCGGTCATCACTAGACCCGAGCCGCAGGCCCTCCCGAGCTCGGTCATCCGTGCCCCGCTCCC AGATCTTTATCCGTTTGGGACCATGCGTGGAGGCGGCTTTGGGGATCGGGATCGTGACAGGGACCGTGGA GGGTTTGGAGCAAGAGGTGGTAGTGGGCTTCCCCCTAAGAAGTTTGGTAATCCTGGGGAGCGGTTACGAA AAAAGAAGTGGGATTTGAGTGAACTCCCTAAATTTGAGAAGAATTTTTATGTTGAGCATCCAGAAGTAGC AAGACTGACTCCGTATGAGGTTGATGAGCTACGGCGTAAGAAAGAGATTACAGTGAGAGGGGGAGATGTT TGTCCAAAACCTGTCTTTGCCTTCCATCATGCTAACTTTCCACAGTATGTGATGGATGTGCTGATGGATC AGCACTTTACAGAACCCACTCCCATTCAGTGCCAGGGATTTCCTTTGGCTCTTAGTGGCAGGGATATGGT TGGCATTGCACAGACTGGCTCTGGGAAGACATTGGCGTATTTGCTGCCTGCGATTGTTCATATAAACCAC CAGCCATACTTGGAAAGAGGAGATGGTCCAATTTGTCTAGTGCTGGCTCCTACCAGAGAGCTTGCGCAGC AGGTGCAGCAGGTGGCTGACGATTATGGAAAATGCTCCAGGTTGAAGAGTACGTGCATTTACGGAGGTGC TCCTAAAGGTCCCCAAATTCGAGACTTGGAAAGAGGTGTTGAGATTTGCATAGCCACTCCTGGGCGCCTA ATAGATTTCCTGGAGTCAGGAAAGACAAACCTTCGCCGATGTACTTACCTTGTGTTGGATGAGGCTGACC GGATGCTTGATATGGGCTTTGAGCCCCAGATCCGTAAAATTGTTGATCAAATCAGGCCTGACCGGCAGAC ACTGATGTGGAGTGCAACCTGGCCGAAGGAAGTGAGGCAGCTTGCAGAGGATTTCCTGCGGGACTACACC CAGATCAATGTGGGCAATCTGGAGCTGAGTGCCAACCACAACATCCTACAGATTGTAGATGTCTGTATGG TGAGTGAAAAAGACCACAAATTGATCCAGCTGATGGAGGAAATCATGGCGGAAAAGGAAAATAAGACTAT AATATTTGTGGAGACAAAGAGGCGCTGTGATGACCTCACACGAAGAATGCGCAGATATGGTTGGCCTGCT ATGTGTATCCATGGAGACAAGAGTCAACCAGAAAGAGATTGGGTACTTAATGAGTTCCGATCTGGAAAGG CTCCTATCCTCATTGCCACGGATGTAGCCTCCCGTGGGCTAGGTTTGTATAGATAGGTGTCTCTATCAGT GCTTTGTTTATCTTTTGGTTTAAAAAATTTTTTTTGTCATGTCAGATTTGCAATTGTATGTACATGAGTC TAGTTAAAAGAGGGTATAAGTGTGATTTTTTTTTTTTCCCTCCCTGCAACTTTCTTTTAACCTTCATGGG GGTTTTATTATTATTTTGGGTTTTCTGTGGTTCCCACCCCGTTTATTTTCAAAGTTCCGTCTGGCTCCTA GCAGTCTTTGGTCTGTAACAAGGCTTAGACATGACTATTAAATTACAGTTTTATGGCTGGATAGAAGGAG CCTAATTAGACCTAGCCATCAGAAGCTGGTTTCTTTAGTTTTCCCTTATACTAGTCTGTTTACTATAGAA ACAGGGAGACCACTTCATGAACATTCACTCAGGGGTTTTGATTGCTCTCTATATAATGTCATTCTATTCA GTCTGCATTGCCCAGTATTACTTCAGTAATATGATTGTCAGTTATCCCTCCCTTTACCCGTTGTTTGGCC TTAGACATGTTTTCCGGTTTAGAACTTGATCTGAAGATAATCTGAAGTTTTCAACTCCTGCTTTAAAATA CATACAGATAGCCAGCCTATGACACGCTGACCCAGAATGTTTACATGTATAAGGATTATCTGGGTGTGGT AATACACACCTTTGATCCCCACACTTGGGAGACAGAGGCATGGTTTCCTTAGTTTGAGGCAAACCTGGTA TGCATAGTGAGTTGTAGACCAGCCAGGGCTACACTGCTAGGCTCTGTCTCCAGAAAAAGATTTCTTACAG CTAGGCATGGTAGTATATGCCTGTAAATTCCAGCACTTGGAAACCTTAGGCAAGAGATTCATTTGTTTGA GGGCAACCTACGTTAAATAGCAGGGTCTTGTTTTAGAGAGCTGGGGTGATTTCTGTTGGGAGGGAACCAT TATTGATGTGTTTAATTTCCTGCTGAGTAAGGTGAGAAGTACCAAGTTTCCCTGTGCAATTTAACATAGA GATGATAAGTATTGAAATGAGTTCAGCAGTGATGGAGCCTTTTTATCCATTCAATTTTACTCCTCCTTGA GGTAGTGAGTGACCTGCAGCCATGGTGGGAAGTTGTCTCTTCCTTCCGAGGTCATCTCTGGGTCTGTGCC CTTAGAACCGGGGCCTGGGAGAGGAGGCAGAAGCCTGAAAGCAATTTACATAAAAAGCTTTCAGTAATGG TGGTTTTTAAAACAGGCTTGCTATGTGCTGGTAGCTTCTTTGTGCATCTTGCCTAGACAATTAAAAATTT GTTCTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6816663 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6816663 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7755 same embryo
	EMAGE:7754 same embryo
	EMAGE:7752 same embryo
	EMAGE:7756 same embryo
	EMAGE:7751 same embryo
	EurExpress:euxassay_007495 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source