EMAGE mouse gene expression spatial database

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EMAGE:7758

Tmem167b transmembrane protein 167B ( MGI:1914745)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_007450. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_007450_01	euxassay_007450_02	euxassay_007450_03	euxassay_007450_04

euxassay_007450_05	euxassay_007450_06	euxassay_007450_07	euxassay_007450_08	euxassay_007450_09

euxassay_007450_10	euxassay_007450_11	euxassay_007450_12	euxassay_007450_13	euxassay_007450_14

euxassay_007450_15	euxassay_007450_16	euxassay_007450_17	euxassay_007450_18	euxassay_007450_19

euxassay_007450_20	euxassay_007450_21	euxassay_007450_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

7758_wholemount_strong.wlz

7758_wholemount_moderate.wlz

7758_wholemount_weak.wlz

7758_wholemount_possible.wlz

7758_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:7758_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T8991
Entity Detected:	Tmem167b, transmembrane protein 167B ( MGI:1914745)
Sequence:	sense strand is shown >T8991 CGGGAAGTGTCAAGTGGGAGCCGGGTTCCCCCGCATTTGCAGCCGCCACAGCTGAACCCGGACCCCTCAC CCCAGCCGGGCACTACCGCCATGACGAACGTGTACTCCTTGGATGGGATCCTGGTGTTTGGTTTGCTCTT TGTTTGCACCTGTGCCTACTTCAAGAAAGTACCTCGTCTCAAAACCTGGCTGCTGTCGGAGAAGAAGGGA GTGTGGGGTGTATTCTACAAAGCTGCTGTGATTGGAACCCGGCTGCATGCTGCTGTTGCAATTGCCTGCA TTGTAATGGCCTTTTACGTCCTGTTTATCAAATGAATTCCAAACCCTCCAACTCATCAACTGCCAACCAA GGGATAAAGATGAAGAACTTGTCGGAAACCTGGACCCAGTGTAGGAGAGTTGAGCTAAAATCATTAGTGT CTCCAAGATGACACTGAAGCCTCTGCCTGCCATATGTGGGGAAACCTCATGGTTACGAACATTTTTGCTT CAGGGGATTCCAGAAAGCCAACCTTTAGATCTCTACGTTAATCAGCCCTCAGCAGCAAGTCTGTATGTCC AGATAAACCACGCCCCCATTGATATGATTATCTATCTCCTGCTTAAACACCTATGCTGGGTGGTAGAGCA TTTGGTTAGCATTGGCAAGGTCTTGGGTTCATTCTCCAACACTGGTAAAAACAACCTACAGCTGGCCGTC TATTTGGCTCTTTAGTCCCTCATCAGAATCTTTGAAAACTGAGGCTCACTGGGGAATGATATAGGCTTTG TTCAGACTTCCCAGAAGGTAAAGAGAGGCATTCTGCATAGCCTTGGCTGTCCTGGAACTCTCTATGGAGA GCAGGCTAGCCTCAAACTCACAGAGAGCCGCCTGCCTCTGCCTTCTGAATTAGAGGCAAGTGCCAGGAGA TAATTTTTCAGGCTTCATTTTCTTCATTGGCTAATTTGGATCTGGATCTGGTGAACTGAAGAGAGGGAGA GGGGCTAGATGAGAACTGGGAGTTACGAAAGGCGAAACAATTGTTTGGCTGTTGGAGTGTGTTCTTTCTG TGCATCTGGGAACTTGAGAGAGGGTGGTTCTGCAGAGAGAACAGATTGCCACATGCTGGCAGCCTGAGGG ATTTCTCAAGAGAACCTGAGTGCATAGGAAAGCCAGGGTTATCAGTAAGAAGCAGTAACAGAAGCAAGCA AGGCAGCAGTCTTCCGCTTACCAGGGTCCCCAGAGAAGACTTCACTCAACTGACAGAGAAAAGGAACCAA CTCTCGCTATTTCCTAAAGCTTTTTAAACACTTTCTAAATCACCTAGTGCTAAATACTGTTACTGGGTTT TAAATACGAATGCTGGGGGAGGGGACTATTAAAAAAATCATTGATTAATATTTGAAGTTCTGGTAGAAGA GATAAGTAAATTAGTATATCAGTTCATATACTAGTAAGCTCATCTAGTGTAAGAATTTGCTGCGATGAAA ATGTATGTAGATGGGAGTTTTGCCATGTTATAAAAGACACAAGCTTGTTCTCTAATCTGGTCTCCAGCAA GTTTTAGTTGTGTCTCTGCCAACTCTTAGTGTTGTCCATACTGCAGTATTTCACTCTCTGTTAAGACCAT GAGAAACTGAAATGAGAAAACCCACTGATACTAACATTTGGTCAGCTCGTAGAATTCATTAATGAGTGTG TTTCTGAGGAAAGAAAAATGAAGCTTTGCAACTGAGTGTTGAGGGCTTTTCCTCGGAGTTGGGGGACTCC TGAGCAGGTGATGTCAGATGTCTCTGCCTTTGAAGGGACGATTTCTCCCTTCCCTCCTTACACCCGAAAA AGACTCAGTTTGTAAATGTGAAGTCTACAACAGTGGAACAAAAAGTAGGTCTAATATTATAGTACACACG AGCCACACATGCTCAGTGGAATTGTGTGTCATAAAGCTTGACAGAACAAGTGCAGGGGCTCACTCCCAGA AGTGAAATTCGCTTTTGTCTGCACACTGCACCAGAACAGGCTGCTGGGAATCGCAGGTCCTGATGCAGTT GACTGCTGTGAGGGTCTGCAGCAGTGTAGAAAGTCACCAAGCACACGATGCATGTGTAAGGCTCGCTAGG AATTGGTCCACAGGCAAATTGCAATGATTGCTGTTTTCTGGCCATTCCTAAGGATCCTTCCTCAGGAGAG AGAAAAATTTAATGGGTCTGGAGAGATCTTGTGGATGGGAGTTTGAGACCTGTTGACCAACTGGGTGTCT CTTGGGAAGTAGGCACAACACGAGTTACTTTATATTTAATGTCTTGTTTTCAAATAGGGCTGGCTTCTCT GACTCTGGTCTAGAAAACAGCTTCCCTTCTTAAACAGCTTTCATTCTGCAGCTTCCTTGTGGATCCTCTT GGCTTAAATGTTTTTGCATTATTATATTTTGAGATGTTTTCTTATCAGAATGTATTAAAAAGTACAGGAA GAAACAAATGGCCTATTTCATTTTTGGCTTTCTGTAACCAGGCAAATAGAAACCTGGTGTACTTATTACT TAGGCTGACGTGTTTCATTTTTTTTTTTTTTTTTTTTTGGCAAAGACAAAATGGTAAATTGTTGTAGGGG AGGTCCTTCAGGGGTGGAGGTATGAGGGTAACAATATTACTTCAGATTCAGGCTGGCGTGGCCACCAACC CTGTGCACCAGGGTTAGATGAACCCAGCTCCTATTTTATAGTGGAATCAGCACCTTTTTTTATTCACCAT TGTTGGCACAATCCTTGGAAATAAACTTTTTTCCCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6811263 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6811263 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:7760 same embryo
	EMAGE:7759 same embryo
	EMAGE:7761 same embryo
	EMAGE:7762 same embryo
	EMAGE:7757 same embryo
	EurExpress:euxassay_007450 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source