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EMAGE:782

Hoxa2 homeobox A2 ( MGI:96174)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:782
Figure 2D of Gavalas et al., 2001 [PMID:11532923] . Copyright: This image is from Development and is displayed with permission of The Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Abbreviation used: pa2, second pharyngeal arch.
Expression Pattern Description
Spatial Annotation:
EMAGE:782Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
782_wholemount_strong_3D_1.wlz
782_wholemount_moderate_3D_1.wlz
782_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:782_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
2nd branchial arch mesenchyme derived from neural crest
moderate moderate
regionalExpression is in a continuous stream from r4 to the distal tip of the arch
rhombomere 04
moderate moderate
regionalExpression is in a continuous stream from r4 to the distal tip of the arch
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:2149795
Entity Detected:Hoxa2, homeobox A2 ( MGI:96174)
Notes:The probe used in this study by Gavalas et al., 2001 [PMID:11532923] is of undefined sequence.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Gavalas et al., 2001 [PMID:11532923] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:11532923] Gavalas A, Trainor P, Ariza-McNaughton L, Krumlauf R 2001 Synergy between Hoxa1 and Hoxb1: the relationship between arch patterning and the generation of cranial neural crest. Development (128):3017-27
Links:MGI:2150079 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI