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EMAGE:7932

Arl5b ADP-ribosylation factor-like 5B ( MGI:1923119)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:7932 EMAGE:7932 EMAGE:7932 EMAGE:7932 EMAGE:7932
"Pseudo-wholemount" of euxassay_012949. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_012949_01 euxassay_012949_02 euxassay_012949_03 euxassay_012949_04
EMAGE:7932 EMAGE:7932 EMAGE:7932 EMAGE:7932 EMAGE:7932
euxassay_012949_05 euxassay_012949_06 euxassay_012949_07 euxassay_012949_08 euxassay_012949_09
EMAGE:7932 EMAGE:7932 EMAGE:7932 EMAGE:7932 EMAGE:7932
euxassay_012949_10 euxassay_012949_11 euxassay_012949_12 euxassay_012949_13 euxassay_012949_14
EMAGE:7932 EMAGE:7932 EMAGE:7932 EMAGE:7932 EMAGE:7932
euxassay_012949_15 euxassay_012949_16 euxassay_012949_17 euxassay_012949_18 euxassay_012949_19
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euxassay_012949_20 euxassay_012949_21 euxassay_012949_22 euxassay_012949_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:7932Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
7932_wholemount_strong.wlz
7932_wholemount_moderate.wlz
7932_wholemount_weak.wlz
7932_wholemount_possible.wlz
7932_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:7932_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T39072
Entity Detected:Arl5b, ADP-ribosylation factor-like 5B ( MGI:1923119)
Sequence:sense strand is shown

>T39072
AGCATCGTTATCACCAGCAGTATATTACTGAAAGGCATAATAACATGGTCTTTCCATAAATGTGGCTGTG
GATGATGTGAAAGAGGCTTCAAATTCTTTTTGCCCCACCTCCTGTCTCTGTGTAGGTAGAATTGTTCCTA
AACTCTTATAGGGTGCTCTGAATCTATTCCTAGCTTTAGAATGTTCCTATGAGACTCAGTGTTCATGTTC
TGTCTGTTTGTTTGTTTGGCTGGTTTTCGTGTTTGTTTTGTTTTGTTTTGATAGGGTTTCCCTCAGGAGT
CCTTGCCCTGGAACTCACTAGGTAGACCAGACTGTCATAGTCTTAGCCATGTAGATGGTTTAATTGGTTA
CAGAAATGGAAGGAAAGGGCCCAATGCTGAAGTCAGACTTACTGGGCAGTGTTAATGGTTCCCAAAGCAG
TTGTCTAAGATGAAAGTAAGAATGAACCCTTAAGTTGAAAAGGGGACACGTGTTGTCATTAGCCCTATCT
GTGTCATCTGGCTCATCTGCCTTATGAAAGGGATAAAGTGTGTATGTACTAAGGGGTAGTTCTTAGGTTT
TTTTTCAGTATTTTTCATTTAGATCAAAATAAGCTTCAGTGTTCATAAATACCTGCTCAAAATTGGTATT
TTAATTTCAGGGTTTTTGTATGTAAGATGCCTTAAATTTTACTCTCTTTTGGGTTGTACTCATTTGTTAT
ATTTAGTTAATTTAGTTGAATTTGATACTACTTTTTTTTTAGTGTTTGTCCCCTTGATCTGAGAAAGTAG
TT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 94552. Forward Primer - name:094552_F_cDNA_Arl8, sequence:AGCATCGTTATCACCAGCAGTA; Reverse Primer - name:094552_N_SP6_cDNA_Arl8, sequence:AACTACTTTCTCAGATCAAGGGG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:7929 same embryo
 EMAGE:7931 same embryo
 EMAGE:7930 same embryo
 EMAGE:7928 same embryo
 EMAGE:7926 same embryo
 EMAGE:7927 same embryo
 EurExpress:euxassay_012949 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS