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EMAGE:812

Ptch1 patched homolog 1 ( MGI:105373)
TS15 (10.0 dpc)
in situ hybridisation

Data Images
EMAGE:812
Figure 1O of Ybot-Gonzalez et al., 2002 [PMID:11973281] Copyright: This image is from Development and is displayed with the permission of The Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity: one star
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
Image Annotation: arrow - ventral midline neural plate
Expression Pattern Description
Spatial Annotation:
EMAGE:812EMAGE:812Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mapping3D context movie

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
812_voxel_weak_3D_1.wlz
812_voxel_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:812_all_domains.zip
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
neural tube
weak weak
regionalThere is staining at the ventral midline of the plate (beneath the posterior neuropore), but it is of relatively low intensity compared to earlier developmental times. There is no staining in the dorsal neural plate.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1341785
Entity Detected:Ptch1, patched homolog 1 ( MGI:105373)
Notes:The Ptch1 probe used in this study by Ybot-Gonzalez et al., 2002 [PMID:11973281] was previously described by Goodrich et al., 1999 [PMID:10395791] as "a 752-bp riboprobe (M21-3'UTR) corresponding to nucleotides 4435-5187 in the 3' UTR." The mouse Ptch1 sequence reported by Goodrich et al (U46155.1/NM_008957.1) does not include UTR sequences therefore exact probe sequence is unable to be defined.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:10.0 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:section
Procedures
General Information
Authors:Ybot-Gonzalez et al., 2002 [PMID:11973281] Indexed by GXD, Spatially Mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:11973281] Ybot-Gonzalez P, Cogram P, Gerrelli D, Copp AJ 2002 Sonic hedgehog and the molecular regulation of mouse neural tube closure. Development (129):2507-17
 [ doi:10.1006/dbio.1999.9311] [ PMID:10395791] Goodrich LV, Jung D, Higgins KM, Scott MP 1999 Overexpression of ptc1 inhibits induction of Shh target genes and prevents normal patterning in the neural tube. Dev Biol (211):323-
Links:MGI:2178347 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI