EMAGE mouse gene expression spatial database

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EMAGE:8539

Cdh10 cadherin 10 ( MGI:107436)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_009792. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_009792_01	euxassay_009792_02	euxassay_009792_03	euxassay_009792_04

euxassay_009792_05	euxassay_009792_06	euxassay_009792_07	euxassay_009792_08	euxassay_009792_09

euxassay_009792_10	euxassay_009792_11	euxassay_009792_12	euxassay_009792_13	euxassay_009792_14

euxassay_009792_15	euxassay_009792_16	euxassay_009792_17	euxassay_009792_18	euxassay_009792_19

euxassay_009792_20	euxassay_009792_21	euxassay_009792_22	euxassay_009792_23	euxassay_009792_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

8539_wholemount_strong.wlz

8539_wholemount_moderate.wlz

8539_wholemount_weak.wlz

8539_wholemount_possible.wlz

8539_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:8539_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

diencephalon lateral wall mantle layer

weak

regional

weak expression: see section 14 15 16 17

cerebral cortex mantle layer

weak

regional

weak expression: see section 01 02 03 04 05 06 07 20 21 22 23 24

olfactory cortex mantle layer

weak

regional

weak expression: see section 09 10 17 18

medulla oblongata basal plate mantle layer

moderate

regional

moderate expression: see section 09 12 13 14 16

rest of cerebellum mantle layer

moderate

regional

moderate expression: see section 06 07 09 10 18 19 weak expression: see section 08 11 14 15 16 17

tegmentum

weak

regional

weak expression: see section 12 13 14

spinal cord mantle layer

weak

regional

weak expression: see section 11 12 14 15

nose

weak

regional

weak expression: see section 09 13

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T30652
Entity Detected:	Cdh10, cadherin 10 ( MGI:107436)
Sequence:	sense strand is shown >T30652 AAAAAGCTCCGGCGAGATATAATTCCTGAAACGTTATTTATACCCCGGAGGACTCCTACCGCCCCAGATA ACACCGATGTCCGGGATTTCATTAACGAGCGACTCAAAGAGCATGACCTGGACCCCACTGCGCCTCCCTA CGACTCACTGGCTACCTACGCCTACGAAGGAAACGACTCCGTGGCCGAATCTCTGAGCTCTTTAGAATCA GGTACCACTGAAGGAGACCAAAACTACGATTACCTCCGAGAATGGGGACCTCGGTTTAATAAACTAGCAG AAATGTACGGTGGTGGCGAGAGCGACAAAGATGCTTAGCCTGGCGCCTGTGTTATGTTCAACGAGATAAA GTTAACTTTGCGGACACTGTCTCCACTTCACAATATTTGATATTCAGGAGAAATTTTTTTCCTGCCACTC AGCACACGTTTCCCACTTATTTCTTAATTTGTTCATTAATGATATTAATTCTTTCCTGTAGGGTGTCTCA TGGAATATATACGACATTTTATTTAATCACTTCCAAGAGCCAAAGCTATGGAAATTCAATGTTGTCCATC TTAGTAAATAAAAGAGACCTGAGCAGGATAGTTCTCCCTTAAGCAACCTCACGAACAAGCCGCTTCTGTT AGATACACGTCTTGCTCTTGCAAATGAAGCTTTGATAAGACGAAGAAAACACTGAAGATGTATCCTGTTC TGTACATTAAGTTTAAAGAAAAAAATGTACATGTGGTGTTAGTTGGTGTGATATGCAGCCT
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:6414052), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 59955. Forward Primer - name:059955_F_IRAV116_g07_A830016G23Rik, sequence:AAAAAGCTCCGGCGAGAT; Reverse Primer - name:059955_R_SP6_IRAV116_g07_A830016G23Rik, sequence:CAGGCTGCATATCACACCA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:8540 same embryo
	EMAGE:8541 same embryo
	EMAGE:8543 same embryo
	EMAGE:8544 same embryo
	EMAGE:8542 same embryo
	EurExpress:euxassay_009792 same experiment
	MGI:4823762 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source