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EMAGE:872

Hoxa1 homeobox A1 ( MGI:96170)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:872
Figure 5E of Hunt et al., 1991 [PMID:1688181] . Copyright: This image is from Development and is displayed with permission of The Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity: two stars
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
Abbreviation used: b2 and 3, branchial arches 2 and 3; fg, foregut.
Expression Pattern Description
Spatial Annotation:
EMAGE:872EMAGE:872Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mapping3D context movie

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
872_voxel_strong_3D_1.wlz
872_voxel_moderate_3D_1.wlz
872_voxel_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:872_all_domains.zip
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
foregut
detected detected
regionalExpression in the lining of the foregut.
future brain
not detected not detected
neural tube
not detected not detected
3rd branchial arch ectoderm
detected detected
Expression in the ectoderm and mesenchyme of the third branchial arch and posterior regions.
cranial preganglion
not detected not detected
3rd branchial arch mesenchyme
detected detected
Expression in the ectoderm and mesenchyme of the third branchial arch and posterior regions.
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1928769
Entity Detected:Hoxa1, homeobox A1 ( MGI:96170)
Notes:The Hoxa1 (Hox-1.6) probe used in this study by Hunt et al., 1991 [PMID:1688181] is of undefined sequence.
Chemistry:RNA
Strand:antisense
Label:S35
Specimen
Organism:mouse
Strain:CBA x C57BL
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:section
Procedures
Staining procedure:autoradiography
General Information
Authors:Hunt et al., 1991 [PMID:1688181] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:1688181] Hunt P, Whiting J, Nonchev S, Sham MH, Marshall H, Graham A, Cook M, Allemann R, Rigby PW, Gulisano M, Faiella A, Boncinelli E, Krumlauf R 1991 The branchial Hox code and its implications for gene regulation, patterning of the nervous system and head evolution. Development (1991):63-77
Links:MGI:1928952 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI