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EMAGE:8725

4930503L19Rik RIKEN cDNA 4930503L19 gene ( MGI:1922045)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:8725
euxassay_010031_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:8725Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
8725_wholemount_possible.wlz
8725_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:8725_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T31781
Entity Detected:4930503L19Rik, RIKEN cDNA 4930503L19 gene ( MGI:1922045)
Sequence:sense strand is shown

>T31781
TCCAGAGCGTCCATCTCCCTGGCACTTTTTTGACGCGGTCGGGTCGTCTGTGTTTTGAATCGAGGTAGTT
GACATTTCTTGCCCTAACTTTTATTCTGCACCGCGATGGATTTAATTCGGGAGATTGAAACCGGCGCTTT
TGAAGGGAATGTATTTAATGGAAATGAATAACTCCTTTTGAGAAAGCCATGGCGAAGTTAAACACAAAGC
TCAGGGGTTGTTCTCAAGAGTCTTCAGTATCTTCTCTCCTGGCAAGCGGCAGCCTGAGTGGCAGCCGCTC
CGACAGCGCCCACAGCGCCCACAGCTCGTTTGTGTATAAGGACCAGCTGTACAGCTCGGCTTCCGAGGCC
CTGCAGGCCTATATTGATGATTTTGACCTGAGCAGAGAACATCCTGGTGCAAACGCTGTCAAAGTGAACA
CTGACGGTGAGATTGGTAATGGGCTGCAATTTTCCAGCTACGTACATATACCCGACAATGCTTTTGTCAA
TCTTGATCCCAAGCAGCACTTTAACCCCTTATACTATAGAAGAGAGACTGTTAATGACATGGACGCCATT
AGCCTGACAACTGATGATTTGTTAAGACTTCCAGCGGATGGATGCTTTTCCTTCCCTTGTGTTCCACCTG
ATCACCGACCAAACAAGAAATACAGTGGAAGACAGGATTCATCAGACATTAAGAATAGTCCAAGTTTTTA
TGTAGACGCTACTTCCAAGAGCAAGAATAATATAGTTCCTCCTTATGTATATACAAATATAAATGGAAAG
AAATGTGGTAGGCCCAGAACCCCAAAACCTATTAACAGAGAAAATAAATGTGTTTCGGAATCATCTTTAT
CTTTTCCTAAAGAATCATCCTTCACGGAGGACAGTGC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:5290837), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 59970. Forward Primer - name:059970_F_IRAV97_d07_4930503L19Rik, sequence:TCCAGAGCGTCCATCTCC; Reverse Primer - name:059970_R_SP6_IRAV97_d07_4930503L19Rik, sequence:TGCACTGTCCTCCGTGAA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:8726 same embryo
 EMAGE:8724 same embryo
 EMAGE:8722 same embryo
 EMAGE:8723 same embryo
 EMAGE:8721 same embryo
 EurExpress:euxassay_010031 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS