Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:8937

Kcnc1 potassium voltage gated channel, Shaw-related subfamily, member 1 ( MGI:96667)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:8937 EMAGE:8937 EMAGE:8937 EMAGE:8937 EMAGE:8937
"Pseudo-wholemount" of euxassay_012867. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_012867_01 euxassay_012867_02 euxassay_012867_03 euxassay_012867_04
EMAGE:8937 EMAGE:8937 EMAGE:8937 EMAGE:8937 EMAGE:8937
euxassay_012867_05 euxassay_012867_06 euxassay_012867_07 euxassay_012867_08 euxassay_012867_09
EMAGE:8937 EMAGE:8937 EMAGE:8937 EMAGE:8937 EMAGE:8937
euxassay_012867_10 euxassay_012867_11 euxassay_012867_12 euxassay_012867_13 euxassay_012867_14
EMAGE:8937 EMAGE:8937 EMAGE:8937 EMAGE:8937 EMAGE:8937
euxassay_012867_15 euxassay_012867_16 euxassay_012867_17 euxassay_012867_18 euxassay_012867_19
EMAGE:8937 EMAGE:8937 EMAGE:8937 EMAGE:8937
euxassay_012867_20 euxassay_012867_21 euxassay_012867_22 euxassay_012867_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:8937Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
8937_wholemount_strong.wlz
8937_wholemount_moderate.wlz
8937_wholemount_weak.wlz
8937_wholemount_possible.wlz
8937_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:8937_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T38519
Entity Detected:Kcnc1, potassium voltage gated channel, Shaw-related subfamily, member 1 ( MGI:96667)
Sequence:sense strand is shown

>T38519
TTTGCCACCATGATCTACTACGCCGAGAGGATAGGGGCACAGCCCAATGACCCCAGCGCCAGCGAACACA
CACACTTTAAAAACATCCCCATCGGCTTCTGGTGGGCTGTGGTCACCATGACGACACTGGGCTATGGAGA
CATGTATCCCCAGACGTGGTCTGGAATGCTGGTGGGAGCCTTGTGTGCTCTGGCTGGTGTGCTGACCATT
GCCATGCCGGTGCCTGTCATCGTGAACAATTTTGGGATGTACTACTCTTTAGCCATGGCTAAGCAGAAAC
TACCAAAGAAAAAAAAGAAGCATATTCCGCGGCCACCACAGCTGGGATCTCCCAATTATTGTAAATCTGT
CGTAAACTCTCCACACCACAGTACTCAGAGTGACACATGCCCGCTGGCCCAGGAAGAAATTTTAGAAATT
AACAGAGCAGGTAGGAAACCTCTCAGAGGCATGTCGATCTGACCTTTCACCTCCGCCCCCTGTAGCAATG
ATTCCAGATCCAG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 149011. Forward Primer - name:149011_F_cDNA_Kcnc1, sequence:TTTGCCACCATGATCTACTACG; Reverse Primer - name:149011_N_SP6_cDNA_Kcnc1, sequence:CTGGATCTGGAATCATTGCTA. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:8938 same embryo
 EMAGE:8936 same embryo
 EMAGE:8934 same embryo
 EMAGE:8935 same embryo
 EMAGE:8939 same embryo
 EurExpress:euxassay_012867 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS