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EMAGE:900

Hoxc9 homeobox C9 ( MGI:96199)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:900
Figure 5B (wt) Juan & Ruddle, 2003 [PMID:12917291] . Copyright: This image is from Development and is displayed with permission of The Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
Abbreviation used: s, somite.
Expression Pattern Description
Spatial Annotation:
EMAGE:900Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
900_wholemount_strong_3D_1.wlz
900_wholemount_moderate_3D_1.wlz
900_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:900_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
neural tube
detected detected
regional
trunk paraxial mesenchyme
detected detected
regional
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:2675433
Entity Detected:Hoxc9, homeobox C9 ( MGI:96199)
Notes:The probe used in this study by Juan & Ruddle, 2003 [PMID:12917291] was a genomic fragment "containing part of exon I of mouse Hoxc9 (291 bp)".
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Juan & Ruddle, 2003 [PMID:12917291] . Indexed by GXD, Spatially mapped by EMAGE.
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ doi:10.1242/dev.00672] [ PMID:12917291] Juan AH, Ruddle FH 2003 Enhancer timing of Hox gene expression: deletion of the endogenous Hoxc8 early enhancer. Development (130):4823-34
Links:MGI:2675444 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI