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EMAGE:906

Lhx1 LIM homeobox protein 1 ( MGI:99783)
TS09 (6.5 dpc)
in situ hybridisation

Data Images
EMAGE:906
Fig 4C Acampora et al, 2001 [PMID:11731460] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd who owns the copyright.

Expression pattern clarity: three stars
Find spatially similar expression patterns: Find spatially similar patterns
Notes:
Anterior is to the left in this sample.
Expression Pattern Description
Spatial Annotation:
EMAGE:906EMAGE:906Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
3D mapping3D context movie

View mapped 3D expression image EMAGE genex expression entry
Download individual expression domains:
906_voxel_strong_3D_1.wlz
906_voxel_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:906_all_domains.zip
Find spatially similar expression patterns: EMAGE spatially similar patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
embryo
detected detected
regionalThe details of these results are not described in the text
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1321239
Entity Detected:Lhx1, LIM homeobox protein 1 ( MGI:99783)
Sequence:sense strand is shown

>MGI:1321239
TCGACTCTAATTGCCCTGTCGCTCCGGGCCTCACCGGACCAAACCAAAGACCATGGTGCACTGTGCGGGC
TGCAAAAGGCCCATCCTGGACCGTTTCCTCTTGAACGTGTTGGACAGGGCCTGGCACGTCAAGTGCGTCC
AGTGCTGTGAATGTAAATGCAACCTGACCGAGAAGTGCTTCTCCCGGGAAGGCAAGCTCTACTGTAAAAA
CGACTTCTTCCGATGTTTCGGTACCAAATGCGCCGGTTGTGCGCAGGGCATCTCTCCAAGCGATCTGGTT
CGCAGAGCGCGAAGCAAAGTGTTTCACCTCAACTGCTTCACCTGCATGATGTGTAACAAGCAGCTCTCCA
CCGGCGAGGAGCTCTACATCATAGACGAGAACAAGTTCGTTTGTAAAGAGGATTACCTGAGTAACAGCAG
TGTCGCCAAAGAGAACAGCCTCCACTCGGCCACCACAGGCAGTGACCCTAGTTTATCTCCGGATTCCCAA
GATCCATCGCAGGATGATGCCAAGGACTCTGAAAGTGCCAACGTCTCAGATAAGGAAGGTGGTAGTAATG
AGAATGATGATCAGAACCTAGGTGCCAAACGTAGGGGACCCCGGACCACGATCAAAGCCAAGCAACTGGA
GACGTTGAAGGCAGCCTTTGCAGCTACACCCAAGCCCACACGCCATATCCGTGAGCAACTGGCCCAGGAG
ACTGGCCTCAACATGCGTGTTATCCAGGTCTGGTTCCAGAATCGACGCTCCAAGGAGCGAAGGATGAAAC
AGCTAAGCGCGCTAGGCGCGCGGCGCCACGCCTTTTTCCGCAGTCCTCGTCGGATGCGGCCGCTGGTGGA
CCGCCTGGAGCCGGGCGAACTCATCCCCAACGGCCCCTTCTCCTTTTACGGAGATTACCAGAGTGAGTAC
TACGGTCCCGGAGGCAACTACGACTTCTTCCCGCAAGGACCGCCATCCTCTCAGGCTCAGACGCCAGTGG
ACCTACCCTTTGTGCCATCATCTGGCCCTTCGGGGACGCCCCTTGGAGGTCTGGACCACCCGCTGCCTGG
TCACCACCCTTCCAGTGAGGCGCAGCGATTTACTGACATCCTGGCACATCCCCCAGGGGACTCCCCTAGT
CCTGAGCCCAGCTTGCCCGGGCCTCTCCACTCCATGTCAGCGGAGGTCTTCGGGCCCAGTCCACCTTTCT
CATCTCTGTCGGTCAATGGTGGAGCCAGCTACGGGAACCATTTGTCTCACCCTCCTGAAATGAACGAGGC
AGCCGTGTGGTAGCGGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATTTC
A
nt 1308 - nt 2638 of NM_008498.1
Notes:The Lhx1 (Lim1) probe used in this study by Acampora et al, 2001 [PMID:11731460] is described as that used by Acampora et al, 1998 [PMID:9811592] ie. "a PCR fragment including the full coding sequence plus 52 bp and 58 bp, respectively, located upstream and downstream the coding sequence (Barnes et al., 1994 [PMID:7904966] ".
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:6.5 dpc
Theiler Stage:TS09
Mutations:none (wild-type)
Preparation:section
Procedures
General Information
Authors:Acampora et al, 2001 [PMID:11731460] Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:11731460] Acampora D, Boyl PP, Signore M, Martinez-Barbera JP, Ilengo C, Puelles E, Annino A, Reichert H, Corte G, Simeone A 2001 OTD/OTX2 functional equivalence depends on 5' and 3' UTR-mediated control of Otx2 mRNA for nucleo-cytoplasmic export and epiblast-restricted translation. Development (128):4801-13
 [ PMID:9811592] Acampora D, Avantaggiato V, Tuorto F, Briata P, Corte G, Simeone A 1998 Visceral endoderm-restricted translation of Otx1 mediates recovery of Otx2 requirements for specification of anterior neural plate and normal gastrulation. Development (125):5091-104
 [ doi:10.1006/dbio.1994.1018] [ PMID:7904966] Barnes JD, Crosby JL, Jones CM, Wright CV, Hogan BL 1994 Embryonic expression of Lim-1, the mouse homolog of Xenopus Xlim-1, suggests a role in lateral mesoderm differentiation and neurogenesis. Dev Biol (161):168-78
Links:MGI:2155355 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI