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EMAGE:9064

Spast spastin ( MGI:1858896)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9064 EMAGE:9064 EMAGE:9064 EMAGE:9064 EMAGE:9064
"Pseudo-wholemount" of euxassay_017906. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017906_01 euxassay_017906_02 euxassay_017906_03 euxassay_017906_04
EMAGE:9064 EMAGE:9064 EMAGE:9064 EMAGE:9064 EMAGE:9064
euxassay_017906_05 euxassay_017906_06 euxassay_017906_07 euxassay_017906_08 euxassay_017906_09
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euxassay_017906_10 euxassay_017906_11 euxassay_017906_12 euxassay_017906_13 euxassay_017906_14
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euxassay_017906_15 euxassay_017906_16 euxassay_017906_17 euxassay_017906_18 euxassay_017906_19
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euxassay_017906_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9064Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9064_wholemount_strong.wlz
9064_wholemount_moderate.wlz
9064_wholemount_weak.wlz
9064_wholemount_possible.wlz
9064_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9064_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T51052
Entity Detected:Spast, spastin ( MGI:1858896)
Sequence:sense strand is shown

>T51052
GGATGCTGGCTAAAGCAGTAGCTGCAGAGTCTAATGCGACCTTTTTCAACATAAGTGCTGCCAGTTTAAC
TTCAAAATATGTGGGAGAAGGAGAGAAATTGGTGAGAGCTCTCTTTGCTGTGGCTCGAGAACTTCAACCA
TCTATAATTTTTATAGATGAAGTTGACAGTCTTTTGTGTGAGAGACGGGAAGGGGAGCACGACGCTAGCA
GACGGCTAAAGACGGAATTTTTAATAGAATTTGACGGGGTGCAATCTGCTGGAGATGACAGAGTACTTGT
AATGGGTGCAACTAACAGGCCCCAAGAGCTTGATGAAGCTGTTCTCAGGCGTTTCATTAAACGGGTATAT
GTGTCCTTACCAAATGAGGAGACAAGACTCCTTCTGCTTAAAAACCTGTTGTGTAAACAAGGAAGTCCAC
TGACCCAAAAAAACTCGCACAGCTTGCTAGAATGACCGATGGATACTCTGGAAGTGATCTGACCGCTTTG
GCCAAGGATGCAGCCCTGGGTCCTATCCGAGAACTGAAGCCAGAGCAGGTGAAGAATATGTCTGCCAGTG
AGATGAGAAATATTCGATTATCTGACTTCACAGAATCCTTAAAAAAGATAAAACGCAGTGTGAGTCCTCA
GACCTTAGAAGCATACATACGCTGGAACAAGGATTTTGGAGACACCACTGTTTAAAGGAATGGATGCCTC
TGTGAGCCCATAGAACATCGCACTTCACAGGAAACAAGAGCTTTGGCTACAGGAACCCAGACTTCGTTTA
CAGGACGTTTTAGAGTTTTCATTTTTGTGCACCAAACTTGAAGAGGAACAAGAAGACAGACCTAAATAAA
ATATGCAATATGAATGGAATTTTTGTTCAAGGCCTTCTTGCGTGATGGTGATGGTTTTGTTTTCTCAGTG
GGCACTGTTAGTTAGAGCACAGCAAAAACAGATTCTGGTTCATTACTGATTATAATCATTCTGTAAATAA
TAATTTGTACATTGCATCCAGATGACAGTATTGCAGAGACAGTGGGTGGTGGAAGACACAGAGCCCTCCC
CCCGGTGTCTGTCTCCTGGTGTCTGTCTTGCAGCAGTCTGGTTTCTGGTTTCCTGTCCTACTGTTCCTTA
GCTGTATCCCTGTGATTGGGATAGCAAGCGTTCTGAGCTCTTCCTGCTTCCTTACCAGCTCAGTGTGCCA
AGTGGAAATCTTCCCATC
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:GGATGCTGGCTAAAGCAGTAGCTGC; Reverse Primer - name:unspecified, sequence:GATGGGAAGATTTCCACTTGGC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9065 same embryo
 EurExpress:euxassay_017906 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS