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EMAGE:9139

Smpd3 sphingomyelin phosphodiesterase 3, neutral ( MGI:1927578)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9139 EMAGE:9139 EMAGE:9139 EMAGE:9139 EMAGE:9139
"Pseudo-wholemount" of euxassay_018696. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018696_01 euxassay_018696_02 euxassay_018696_03 euxassay_018696_04
EMAGE:9139 EMAGE:9139 EMAGE:9139 EMAGE:9139 EMAGE:9139
euxassay_018696_05 euxassay_018696_06 euxassay_018696_07 euxassay_018696_08 euxassay_018696_09
EMAGE:9139 EMAGE:9139 EMAGE:9139 EMAGE:9139 EMAGE:9139
euxassay_018696_10 euxassay_018696_11 euxassay_018696_12 euxassay_018696_13 euxassay_018696_14
EMAGE:9139 EMAGE:9139 EMAGE:9139 EMAGE:9139 EMAGE:9139
euxassay_018696_15 euxassay_018696_16 euxassay_018696_17 euxassay_018696_18 euxassay_018696_19
EMAGE:9139 EMAGE:9139 EMAGE:9139 EMAGE:9139 EMAGE:9139
euxassay_018696_20 euxassay_018696_21 euxassay_018696_22 euxassay_018696_23 euxassay_018696_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9139Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9139_wholemount_strong.wlz
9139_wholemount_moderate.wlz
9139_wholemount_weak.wlz
9139_wholemount_possible.wlz
9139_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9139_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T51058
Entity Detected:Smpd3, sphingomyelin phosphodiesterase 3, neutral ( MGI:1927578)
Sequence:sense strand is shown

>T51058
ACTCCCGGCTAGAAGACAAGAACCCAGCTGGTGGGGCAGCCCTGCTTAGTGAATGGAAGGGCACGGGGGC
AGGCAAAAGCTTTTGCTTCGCCACGGCCAATGTCTGCCTCCTCCCCGACTCACTCGCGAGGCTCAATAAT
GTTTTCAACACTCAAGCTCGGGCCAAAGAGATTGGGCAGAGAATCCGCAATGGGGCCGCCAGGCCTCAGA
TCAAGATCTACATCGATTCTCCCACCAACACCTCCATCAGTGCAGCCAGCTTCAGCAGCCTGGTGTCGCC
ACAGGGTGGTGATGGATCCAGAGCTGTTCCTGGGAGCATTAAGAGGACAGCCTCTGTGGAATACAAGGGG
GATGGTGGGCGTCACCCCAGCGACGAGGCTGCCAACGGCCCAGCCTCTGGAGAACAGGCTGACGGAAGCC
TTGAGGACAGCTGCATTGTGCGAATTGGTGGCGAGGAAGGAGGTCGGCCACAAGAAGCTGATGACCCTGC
TGCCGGGAGCCAAGCCAGGAATGGGGCTGGTGGGACCCCAAAGGGCCAGACACCCAACCACAATCAGCGA
GATGGGGATTCTGGGAGCCTGGGCAGCCCCTCAGCCTCCAGGGAGTCCTTGGTGAAGGCACGGGCTGGGC
AAGACAGTGGTGGCAGCGGAGAGCCAGGGGCTAACAGCAAGCTGCTGTATAAGACCTCTGTGGTGAAGAA
GGCAGCAGCCCGCAGGAGGCGCCACCCTGATGAAGCCTTTGACCACGAGGTCTCAGCCTTCTTCCCGGCC
AATCTGGACTTCCTGTGCCTGCAGGAGGTGTTTGACAAGCGTGCGGCTGCTAAGTTGAAAGAGCAGCTAC
ACGGCTACTTCGAGTACATCCTGTATGATGTTGGGGTCTACGGTTGTCATGGTTGCTGCAAT
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:ACTCCGGCTAGAAGACAAG; Reverse Primer - name:unspecified, sequence:ATTGCAGCAACCATGACAAC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9138 same embryo
 EurExpress:euxassay_018696 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS