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EMAGE:9183

Bdnf brain derived neurotrophic factor ( MGI:88145)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9183 EMAGE:9183 EMAGE:9183 EMAGE:9183 EMAGE:9183
"Pseudo-wholemount" of euxassay_018325. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018325_01 euxassay_018325_02 euxassay_018325_03 euxassay_018325_04
EMAGE:9183 EMAGE:9183 EMAGE:9183 EMAGE:9183 EMAGE:9183
euxassay_018325_05 euxassay_018325_06 euxassay_018325_07 euxassay_018325_08 euxassay_018325_09
EMAGE:9183 EMAGE:9183 EMAGE:9183 EMAGE:9183 EMAGE:9183
euxassay_018325_10 euxassay_018325_11 euxassay_018325_12 euxassay_018325_13 euxassay_018325_14
EMAGE:9183 EMAGE:9183 EMAGE:9183 EMAGE:9183 EMAGE:9183
euxassay_018325_15 euxassay_018325_16 euxassay_018325_17 euxassay_018325_18 euxassay_018325_19
EMAGE:9183 EMAGE:9183 EMAGE:9183 EMAGE:9183
euxassay_018325_20 euxassay_018325_21 euxassay_018325_22 euxassay_018325_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9183Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9183_wholemount_strong.wlz
9183_wholemount_moderate.wlz
9183_wholemount_weak.wlz
9183_wholemount_possible.wlz
9183_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9183_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50154
Entity Detected:Bdnf, brain derived neurotrophic factor ( MGI:88145)
Sequence:sense strand is shown

>T50154
CAGGTGAGAAGAGTGATGACCATCCTTTTCCTTACTATGGTTATTTCATACTTCGGTTGCATGAAGGCGG
CGCCCATGAAAGAAGTAAACGTCCACGGACAAGGCAACTTGGCCTACCCAGGTGTGCGGACCCATGGGAC
TCTGGAGAGCGTGAATGGGCCCAGGGCAGGTTCGAGAGGTCTGACGACGACATCACTGGCTGACACTTTT
GAGCACGTCATCGAAGAGCTGCTGGATGAGGACCAGAAGGTTCGGCCCAACGAAGAAAACCATAAGGACG
CGGACTTGTACACTTCCCGGGTGATGCTCAGCAGTCAAGTGCCTTTGGAGCCTCCTCTACTCTTTCTGCT
GGAGGAATACAAAAATTACCTGGATGCCGCAAACATGTCTATGAGGGTTCGGCGCCACTCCGACCCTGCC
CGCCGTGGGGAGCTGAGCGTGTGTGACAGTATTAGCGAGTGGGTCACAGCGGCAGATAAAAAGACTGCAG
TGGACATGTCTGGCGGGACGGTCACAGTCCTAGAGAAAGTCCCGGTATCCAAAGGCCAACTGAAGCAGTA
TTTCTACGAGACCAAGTGTAATCCCATGGGTTACACCAAGGAAGGCTGCAGGGGCATAGACAAAAGGCAC
TGGAACTCGCAATGCCGAACTACCCAATCGTATGTTCGGGCCCTTACTATGGATAGCAAAAAGAGAATTG
GCTGGCGATTCATAAGGATAGACACTTCCTGTGTATGTACACTGACCATTAAAAGGGGAAGATAGTGGAT
TTATGTTGTATAGATTATATTGAGACAAAATTATCTATTTGTATATATACATAACAGGGTAAATTATTCA
GTTAAGAAAAAATAATTTTATGAACTGCATGTATAAATGAAGTTTATACAGTACAGTGGTTCTACAATCT
ATTTATTGGACATATCCATGACCTGAAAGG
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:GGCAGGTGAGAAGAGTGATGACC; Reverse Primer - name:unspecified, sequence:CCTTTCAGGTCATGGATATGTCC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_018325 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS