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EMAGE:9192

Nr1d2 nuclear receptor subfamily 1, group D, member 2 ( MGI:2449205)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9192 EMAGE:9192 EMAGE:9192 EMAGE:9192 EMAGE:9192
"Pseudo-wholemount" of euxassay_017965. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017965_01 euxassay_017965_02 euxassay_017965_03 euxassay_017965_04
EMAGE:9192 EMAGE:9192 EMAGE:9192 EMAGE:9192 EMAGE:9192
euxassay_017965_05 euxassay_017965_06 euxassay_017965_07 euxassay_017965_08 euxassay_017965_09
EMAGE:9192 EMAGE:9192 EMAGE:9192 EMAGE:9192 EMAGE:9192
euxassay_017965_10 euxassay_017965_11 euxassay_017965_12 euxassay_017965_13 euxassay_017965_14
EMAGE:9192 EMAGE:9192 EMAGE:9192 EMAGE:9192 EMAGE:9192
euxassay_017965_15 euxassay_017965_16 euxassay_017965_17 euxassay_017965_18 euxassay_017965_19
EMAGE:9192 EMAGE:9192 EMAGE:9192 EMAGE:9192 EMAGE:9192
euxassay_017965_20 euxassay_017965_21 euxassay_017965_22 euxassay_017965_23 euxassay_017965_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9192Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9192_wholemount_strong.wlz
9192_wholemount_moderate.wlz
9192_wholemount_weak.wlz
9192_wholemount_possible.wlz
9192_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9192_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50757
Entity Detected:Nr1d2, nuclear receptor subfamily 1, group D, member 2 ( MGI:2449205)
Sequence:sense strand is shown

>T50757
CAGTCAGCACTACCAGCTCAGGAACAGCTGCGGCCCAAGTCCCAGCTGGAGCAAGAAAACATCAAAAACA
CTCCTTCTGATTTTGCAAAGGAGGAAGTGATTGGTATGGTGACCAGAGCCCACAAGGATACCTTTCTGTA
TAATCAGGAACAACGAGAAAACTCATCTGAGAGCATGCCACCTCAGAGAGGAGAACGGATTCCCAGGAAC
ATGGAGCAATATAATTTAAATCAAGACCATCGTGGCAGTGGGATTCACAACCACTTCCCCTGTAGTGAGA
GGCAGCAACATCTCAGTGGACAGTACAAAGGGAGGAACATAATGCATTACCCAAACGGCCATGCCGTTTG
TATTGCAAATGGACACTGTATGAACTTCTCCAGTGCTTATACTCAAAGAGTCTGTGATAGAATTCCAGTA
GGTGGATGTTCTCAGACTGAGAACAGAAATAGTTACCTGTGCAACACTGGAGGGAGGATGCATCTGGTGT
GTCCTATGAGCAAGTCTCCATATGTGGACCCTCAGAAGTCTGGACATGAAATCTGGGAAGAATTTTCAAT
GAGTTTTACCCCAGCAGTAAAAGAGGTGGTGGAATTTGCAAAGAGGATTCCTGGCTTCCGAGATCTGTCT
CAGCATGATCAGGTCAATCTGTTAAAAGCTGGGACTTTTGAGGTTTTAATGGTACGATTTGCTTCATTAT
TTGATGCAAAGGAACGGACTGTCACCTTTCTAAGTGGTAAGAAGTACAGTGTGGATGACCTGCACTCAAT
GGGAGCAGGGGATCTGCTCAGCTCTATGTTTGAGTTCAGTGAGAAGCTGAATGCCCTCCAGCTCAGTGAT
GAGGAAATGAGCTTGTTCACAGCAGTTGTTCTGGTATCTGCAGATCGATCTGGAATTGAAAATGTCA
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:CAAAGTGCAATGAAGACCA; Reverse Primer - name:unspecified, sequence:AGGGCATTCAGCTTCTCAC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9194 same embryo
 EMAGE:9196 same embryo
 EMAGE:9197 same embryo
 EMAGE:9193 same embryo
 EMAGE:9195 same embryo
 EurExpress:euxassay_017965 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS